------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4474 1o1y_A) ( 6 1a04_A) 0.4083 0.5995 3.7374 ( 2 14 28) 0 0.4083 0.5995 19 11 ( 4474 1o1y_A) ( 26 1a2o_A) 0.3350 0.3577 3.8684 ( 5 18 36) 0 0.3590 0.5045 19 10 ( 4474 1o1y_A) ( 90 1a9x_B) 0.7734 0.8125 2.5038 ( 5 73 105) 0 0.7734 0.8125 19 18 ( 4474 1o1y_A) ( 256 1b00_A) 0.4083 0.6237 3.5904 ( 2 14 28) 0 0.4197 0.6237 19 10 ( 4474 1o1y_A) ( 266 1b1c_A) 0.4649 0.7178 5.2044 ( 2 18 36) 0 0.4649 0.7178 19 11 ( 4474 1o1y_A) ( 428 1bmt_A) 0.3350 0.3567 3.7287 ( 5 18 36) 0 0.3358 0.4256 19 11 ( 4474 1o1y_A) ( 477 1bvy_F) 0.4666 0.8179 4.5353 ( 2 19 36) 0 0.4666 0.8550 19 9 ( 4474 1o1y_A) ( 523 1c4k_A) 0.2909 0.3923 4.0439 ( 1 4 15) 0 0.3126 0.6077 19 8 ( 4474 1o1y_A) ( 562 1ccw_A) 0.2781 0.3405 3.6681 ( 2 7 15) 0 0.3012 0.4999 19 10 ( 4474 1o1y_A) ( 745 1d4a_A) 0.3684 0.4666 3.9206 ( 0 8 21) 0 0.4475 0.5288 19 15 ( 4474 1o1y_A) ( 786 1dbw_A) 0.3988 0.5601 4.0063 ( 2 12 28) 0 0.4363 0.6999 19 10 ( 4474 1o1y_A) ( 793 1dcf_A) 0.3175 0.3469 3.5987 ( 4 14 28) 0 0.3350 0.4000 19 10 ( 4474 1o1y_A) ( 971 1dxy ) 0.3446 0.3960 4.3853 ( 3 12 28) 0 0.3446 0.6664 19 9 ( 4474 1o1y_A) ( 980 1dz3_A) 0.3659 0.6474 3.7289 ( 1 9 21) 0 0.3988 0.6474 19 10 ( 4474 1o1y_A) ( 1042 1e5d_A) 0.4721 0.8637 5.3225 ( 1 14 36) 0 0.4721 0.8637 19 10 ( 4474 1o1y_A) ( 1177 1eiw_A) 0.4205 0.8683 4.2402 ( 1 16 28) 0 0.4205 0.8683 19 9 ( 4474 1o1y_A) ( 1252 1es9_A) 0.3452 0.3693 4.5867 ( 4 15 36) 0 0.3802 0.4667 19 12 ( 4474 1o1y_A) ( 1253 1esc ) 0.3684 0.4118 3.3745 ( 0 8 21) 0 0.3684 0.4118 19 17 ( 4474 1o1y_A) ( 1266 1euc_B) 0.2632 0.4167 3.2461 ( 0 2 10) 0 0.3616 0.5285 19 12 ( 4474 1o1y_A) ( 1379 1f2v_A) 0.2105 0.2500 7.7742 ( 0 3 6) 0 0.4728 0.5605 19 16 ( 4474 1o1y_A) ( 1397 1f4p_A) 0.4725 0.9543 4.8106 ( 1 15 36) 0 0.4725 0.9543 19 9 ( 4474 1o1y_A) ( 1443 1f8y_A) 0.2154 0.2446 7.3104 ( 2 5 10) 0 0.4161 0.6652 19 11 ( 4474 1o1y_A) ( 1516 1fjg_B) 0.2105 0.3333 5.4696 ( 0 0 6) 0 0.4210 0.6661 19 12 ( 4474 1o1y_A) ( 1547 1flc_A) 0.2105 0.2222 3.5436 ( 0 2 6) 0 0.3658 0.3855 19 18 ( 4474 1o1y_A) ( 1659 1fye_A) 0.4210 0.4444 4.3119 ( 0 19 28) 0 0.5026 0.5129 19 18 ( 4474 1o1y_A) ( 1662 1fyx_A) 0.3673 0.6737 4.2993 ( 1 11 21) 0 0.4549 0.6737 19 10 ( 4474 1o1y_A) ( 1700 1g2i_A) 0.5153 0.6691 2.9104 ( 3 29 45) 0 0.5153 0.6691 19 14 ( 4474 1o1y_A) ( 1803 1gdh_A) 0.3158 0.5998 5.2022 ( 0 5 15) 0 0.4210 0.7991 19 10 ( 4474 1o1y_A) ( 1901 1gpm_A) 0.7763 0.9077 2.6680 ( 5 77 105) 0 0.7763 0.9077 19 16 ( 4474 1o1y_A) ( 2027 1h05_A) 0.2631 0.4544 6.9769 ( 0 2 10) 0 0.4728 0.8045 19 11 ( 4474 1o1y_A) ( 2427 1i7q_B) 0.7994 0.8345 2.2947 ( 7 85 120) 0 0.7994 0.8345 19 18 ( 4474 1o1y_A) ( 2470 1iex_A) 0.2631 0.4166 6.6236 ( 0 5 10) 0 0.4650 0.6796 19 12 ( 4474 1o1y_A) ( 2714 1j2y_A) 0.2632 0.4545 5.7743 ( 0 6 10) 0 0.4732 0.8105 19 11 ( 4474 1o1y_A) ( 2729 1j4a_A) 0.2678 0.2790 4.3331 ( 5 14 28) 0 0.3988 0.5600 19 10 ( 4474 1o1y_A) ( 2809 1jbe_A) 0.4043 0.5937 3.6845 ( 2 13 28) 0 0.4043 0.5937 19 10 ( 4474 1o1y_A) ( 3034 1jrl_A) 0.3684 0.6995 5.2781 ( 0 12 21) 0 0.4205 0.7864 19 10 ( 4474 1o1y_A) ( 3073 1jvn_A) 0.4027 0.4027 3.4141 ( 3 19 28) 0 0.6189 0.6189 19 19 ( 4474 1o1y_A) ( 3189 1k66_A) 0.3953 0.4551 3.3605 ( 3 14 36) 0 0.4195 0.7045 19 11 ( 4474 1o1y_A) ( 3190 1k68_A) 0.3652 0.4393 6.3060 ( 2 9 28) 0 0.4086 0.4998 19 10 ( 4474 1o1y_A) ( 3199 1k7c_A) 0.3667 0.4613 3.2670 ( 1 10 21) 0 0.4752 0.5817 19 15 ( 4474 1o1y_A) ( 3234 1k9v_F) 0.6726 0.6910 3.4614 ( 9 73 105) 0 0.6726 0.6910 19 18 ( 4474 1o1y_A) ( 3238 1ka9_H) 0.6324 0.6697 3.6931 ( 9 65 105) 0 0.6324 0.6697 19 16 ( 4474 1o1y_A) ( 3295 1kgs_A) 0.3446 0.3940 3.4875 ( 3 12 28) 0 0.4197 0.5180 19 10 ( 4474 1o1y_A) ( 3412 1krw_A) 0.3911 0.5229 3.4695 ( 2 11 28) 0 0.3988 0.7000 19 10 ( 4474 1o1y_A) ( 3462 1kwg_A) 0.6538 0.7169 4.3419 ( 6 50 91) 0 0.6538 0.7169 19 16 ( 4474 1o1y_A) ( 3560 1l7d_A) 0.2343 0.2497 3.3877 ( 2 6 10) 0 0.5005 0.5460 19 17 ( 4474 1o1y_A) ( 3581 1l9x_A) 0.6525 0.5709 4.0810 ( 7 58 91) 0 0.6525 0.5709 19 23 ( 4474 1o1y_A) ( 3632 1li4_A) 0.2632 0.2778 6.3256 ( 0 4 10) 0 0.4727 0.4987 19 18 ( 4474 1o1y_A) ( 3801 1m2e_A) 0.3708 0.4582 4.8757 ( 3 14 28) 0 0.3708 0.5199 19 9 ( 4474 1o1y_A) ( 3896 1mb3_A) 0.3988 0.5601 3.0174 ( 2 12 28) 0 0.4288 0.5601 19 10 ( 4474 1o1y_A) ( 4066 1mx3_A) 0.2668 0.2709 5.7223 ( 7 19 45) 0 0.4696 0.7639 19 11 ( 4474 1o1y_A) ( 4130 1n57_A) 0.4910 0.5109 5.0707 ( 4 28 45) 0 0.4910 0.5109 19 18 ( 4474 1o1y_A) ( 4185 1nat ) 0.4178 0.7341 2.9530 ( 1 10 28) 0 0.4178 0.7341 19 10 ( 4474 1o1y_A) ( 4323 1nni_1) 0.4171 0.5047 5.9107 ( 4 21 36) 0 0.4171 0.5373 19 11 ( 4474 1o1y_A) ( 4433 1ny5_A) 0.4515 0.6467 6.4960 ( 2 14 36) 0 0.4515 0.7327 19 10 ( 4474 1o1y_A) ( 4474 1o1y_A) 1.0000 1.0000 0.0000 ( 0 133 171) 0 1.0000 1.0000 19 19 ( 4474 1o1y_A) ( 4590 1obo_A) 0.4731 0.8870 5.5779 ( 1 19 36) 0 0.4731 0.8870 19 10 ( 4474 1o1y_A) ( 4669 1oi7_A) 0.2343 0.2872 3.2776 ( 1 3 10) 0 0.2624 0.3636 19 11 ( 4474 1o1y_A) ( 4787 1ou0_A) 0.2105 0.2353 8.0299 ( 0 2 6) 0 0.4607 0.4887 19 17 ( 4474 1o1y_A) ( 4813 1oxb_B) 0.3590 0.4245 3.2739 ( 3 13 28) 0 0.3590 0.4245 19 10 ( 4474 1o1y_A) ( 4871 1p2f_A) 0.4188 0.7520 3.5174 ( 1 11 28) 0 0.4188 0.7520 19 10 ( 4474 1o1y_A) ( 4905 1p5f_A) 0.5165 0.6734 6.2182 ( 2 20 45) 0 0.5165 0.6734 19 14 ( 4474 1o1y_A) ( 4916 1p6u_A) 0.3012 0.3228 4.2227 ( 4 13 28) 0 0.3012 0.4202 19 10 ( 4474 1o1y_A) ( 4926 1p80_A) 0.4708 0.6743 2.6763 ( 2 24 36) 0 0.4708 0.6743 19 13 ( 4474 1o1y_A) ( 5096 1psd_A) 0.2105 0.4444 5.3111 ( 0 1 6) 0 0.3684 0.7769 19 9 ( 4474 1o1y_A) ( 5234 1q7r_A) 0.7702 0.8084 4.7124 ( 5 70 105) 0 0.7702 0.8084 19 18 ( 4474 1o1y_A) ( 5289 1qcz_A) 0.2833 0.2985 4.4277 ( 4 12 28) 0 0.3652 0.4394 19 10 ( 4474 1o1y_A) ( 5297 1qdl_B) 0.7830 0.8712 2.2409 ( 4 74 105) 0 0.7830 0.8712 19 17 ( 4474 1o1y_A) ( 5364 1qkk_A) 0.4196 0.5177 7.0664 ( 3 16 36) 0 0.4196 0.5928 19 10 ( 4474 1o1y_A) ( 5397 1qo0_D) 0.4038 0.5507 10.8097 ( 2 13 28) 0 0.4038 0.5507 19 12 ( 4474 1o1y_A) ( 5470 1qvz_A) 0.5138 0.5970 3.4151 ( 3 28 45) 0 0.5704 0.6680 19 16 ( 4474 1o1y_A) ( 5673 1rli_A) 0.3684 0.5833 3.7109 ( 0 8 21) 0 0.3684 0.5833 19 12 ( 4474 1o1y_A) ( 5752 1s2d_A) 0.3644 0.6628 4.6649 ( 1 8 21) 0 0.4133 0.7046 19 9 ( 4474 1o1y_A) ( 5785 1say_A) 0.2632 0.2632 3.4129 ( 0 3 10) 0 0.5256 0.5256 19 19 ( 4474 1o1y_A) ( 5842 1sqs_A) 0.4188 0.5614 4.6935 ( 1 11 28) 0 0.4197 0.5614 19 14 ( 4474 1o1y_A) ( 5920 1tmy ) 0.3590 0.4245 3.1713 ( 3 13 28) 0 0.3708 0.5043 19 10 ( 4474 1o1y_A) ( 6242 1vhq_A) 0.5138 0.6635 2.7744 ( 3 28 45) 0 0.5138 0.6635 19 14 ( 4474 1o1y_A) ( 6258 1vi6_A) 0.4210 0.6153 4.1926 ( 0 11 28) 0 0.4846 0.6153 19 13 ( 4474 1o1y_A) ( 6283 1vjg_A) 0.4288 0.5278 6.4427 ( 3 17 36) 0 0.4665 0.6901 19 12 ( 4474 1o1y_A) ( 6496 2nac_A) 0.2632 0.3846 5.1824 ( 0 4 10) 0 0.5241 0.7547 19 13 ( 4474 1o1y_A) ( 6624 5nul ) 0.4725 0.8719 4.9097 ( 1 15 36) 0 0.4725 0.8719 19 10 ( 4474 1o1y_A) ( 6640 7req_A) 0.3175 0.3436 4.1191 ( 4 14 28) 0 0.3175 0.3436 19 12 ( 4474 1o1y_A) ( 6642 7req_B) 0.2677 0.2733 5.2158 ( 8 22 36) 0 0.3346 0.4538 19 13 -------------------------------------------------------------------------------------------------------------------------