------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4590 1obo_A) ( 6 1a04_A) 0.8994 0.8178 4.1076 ( 0 19 36) 0 0.8995 0.8179 10 11 ( 4590 1obo_A) ( 26 1a2o_A) 0.8994 0.8994 3.9796 ( 0 20 36) 0 0.8994 0.8994 10 10 ( 4590 1obo_A) ( 90 1a9x_B) 0.8992 0.5000 4.3375 ( 0 21 36) 0 0.8992 0.5000 10 18 ( 4590 1obo_A) ( 256 1b00_A) 0.8988 0.8988 4.8254 ( 0 19 36) 0 0.8991 0.8991 10 10 ( 4590 1obo_A) ( 266 1b1c_A) 0.9910 0.9034 3.0135 ( 1 23 45) 0 0.9990 0.9085 10 11 ( 4590 1obo_A) ( 428 1bmt_A) 0.7561 0.7178 5.2208 ( 2 18 36) 0 0.8994 0.8245 10 11 ( 4590 1obo_A) ( 477 1bvy_F) 0.8996 0.9994 3.5769 ( 0 19 36) 0 0.8996 0.9994 10 9 ( 4590 1obo_A) ( 523 1c4k_A) 0.4997 0.6242 6.9472 ( 0 2 10) 0 0.6995 0.8733 10 8 ( 4590 1obo_A) ( 562 1ccw_A) 0.7997 0.7997 3.7838 ( 0 14 28) 0 0.7997 0.7997 10 10 ( 4590 1obo_A) ( 745 1d4a_A) 0.7566 0.5735 4.0268 ( 2 18 36) 0 0.8909 0.6041 10 15 ( 4590 1obo_A) ( 786 1dbw_A) 0.6878 0.6878 5.0492 ( 3 22 45) 0 0.8993 0.8993 10 10 ( 4590 1obo_A) ( 793 1dcf_A) 0.8995 0.8995 3.9457 ( 0 19 36) 0 0.8995 0.8995 10 10 ( 4590 1obo_A) ( 971 1dxy ) 0.5999 0.6666 3.6817 ( 0 6 15) 0 0.7988 0.8869 10 9 ( 4590 1obo_A) ( 980 1dz3_A) 0.5734 0.5734 4.7490 ( 3 18 36) 0 0.7996 0.7996 10 10 ( 4590 1obo_A) ( 1042 1e5d_A) 0.9993 0.9993 3.6212 ( 0 22 45) 0 0.9993 0.9993 10 10 ( 4590 1obo_A) ( 1177 1eiw_A) 0.7989 0.8870 5.4590 ( 0 14 28) 0 0.7989 0.8870 10 9 ( 4590 1obo_A) ( 1252 1es9_A) 0.6995 0.5831 5.3287 ( 0 10 21) 0 0.8773 0.7751 10 12 ( 4590 1obo_A) ( 1253 1esc ) 0.4996 0.2941 7.8380 ( 0 5 10) 0 0.8828 0.5281 10 17 ( 4590 1obo_A) ( 1266 1euc_B) 0.7997 0.6665 3.9270 ( 0 9 28) 0 0.7997 0.6665 10 12 ( 4590 1obo_A) ( 1379 1f2v_A) 0.7643 0.5859 5.5839 ( 2 17 45) 0 0.8972 0.5859 10 16 ( 4590 1obo_A) ( 1397 1f4p_A) 0.8999 0.9998 2.8276 ( 0 18 36) 0 0.8999 0.9998 10 9 ( 4590 1obo_A) ( 1443 1f8y_A) 0.4244 0.4206 5.8468 ( 3 13 28) 0 0.7515 0.6957 10 11 ( 4590 1obo_A) ( 1516 1fjg_B) 0.4000 0.3333 4.0600 ( 0 3 6) 0 0.5999 0.5000 10 12 ( 4590 1obo_A) ( 1547 1flc_A) 0.3999 0.2222 6.0352 ( 0 1 6) 0 0.7962 0.4442 10 18 ( 4590 1obo_A) ( 1659 1fye_A) 0.5998 0.3333 5.0231 ( 0 7 15) 0 0.8963 0.4998 10 18 ( 4590 1obo_A) ( 1662 1fyx_A) 0.6739 0.6739 3.3036 ( 1 11 21) 0 0.6992 0.6992 10 10 ( 4590 1obo_A) ( 1700 1g2i_A) 0.7930 0.6179 4.2151 ( 2 20 36) 0 0.7930 0.6179 10 14 ( 4590 1obo_A) ( 1803 1gdh_A) 0.6000 0.6000 3.0441 ( 0 4 15) 0 0.8978 0.8978 10 10 ( 4590 1obo_A) ( 1901 1gpm_A) 0.8992 0.5624 4.4057 ( 0 20 36) 0 0.8992 0.5624 10 16 ( 4590 1obo_A) ( 2027 1h05_A) 0.8823 0.8070 4.5737 ( 1 17 36) 0 0.8986 0.8173 10 11 ( 4590 1obo_A) ( 2427 1i7q_B) 0.9978 0.5554 4.9092 ( 0 27 45) 0 0.9978 0.5554 10 18 ( 4590 1obo_A) ( 2470 1iex_A) 0.9761 0.8234 4.4815 ( 1 18 45) 0 0.9761 0.8234 10 12 ( 4590 1obo_A) ( 2714 1j2y_A) 0.8914 0.8128 4.8126 ( 1 21 36) 0 0.8984 0.8172 10 11 ( 4590 1obo_A) ( 2729 1j4a_A) 0.7992 0.7992 5.1068 ( 0 12 28) 0 0.8977 0.8977 10 10 ( 4590 1obo_A) ( 2809 1jbe_A) 0.8178 0.8178 4.8395 ( 2 19 45) 0 0.8995 0.8995 10 10 ( 4590 1obo_A) ( 3034 1jrl_A) 0.6994 0.6994 5.4965 ( 0 10 21) 0 0.7984 0.7984 10 10 ( 4590 1obo_A) ( 3073 1jvn_A) 0.5998 0.3158 5.0189 ( 0 9 15) 0 0.7991 0.4210 10 19 ( 4590 1obo_A) ( 3189 1k66_A) 0.7926 0.7600 5.0014 ( 2 18 45) 0 0.8990 0.8176 10 11 ( 4590 1obo_A) ( 3190 1k68_A) 0.7926 0.7926 4.9607 ( 2 18 45) 0 0.8991 0.8991 10 10 ( 4590 1obo_A) ( 3199 1k7c_A) 0.4999 0.3333 5.1130 ( 0 4 10) 0 0.8960 0.5995 10 15 ( 4590 1obo_A) ( 3234 1k9v_F) 0.6918 0.4365 4.8949 ( 2 17 28) 0 0.7990 0.4718 10 18 ( 4590 1obo_A) ( 3238 1ka9_H) 0.6997 0.4375 4.8296 ( 0 13 21) 0 0.7988 0.4999 10 16 ( 4590 1obo_A) ( 3295 1kgs_A) 0.7998 0.7998 3.6799 ( 0 10 28) 0 0.8993 0.8993 10 10 ( 4590 1obo_A) ( 3412 1krw_A) 0.5995 0.5995 6.3689 ( 0 7 15) 0 0.8989 0.8989 10 10 ( 4590 1obo_A) ( 3462 1kwg_A) 0.8815 0.5607 5.3153 ( 1 17 36) 0 0.8815 0.5607 10 16 ( 4590 1obo_A) ( 3560 1l7d_A) 0.8972 0.5292 5.9356 ( 0 15 36) 0 0.8972 0.5292 10 17 ( 4590 1obo_A) ( 3581 1l9x_A) 0.8982 0.3913 5.3361 ( 0 21 36) 0 0.8982 0.3948 10 23 ( 4590 1obo_A) ( 3632 1li4_A) 0.9140 0.5500 6.2559 ( 2 25 45) 0 0.9140 0.5500 10 18 ( 4590 1obo_A) ( 3801 1m2e_A) 0.7337 0.7645 5.2074 ( 2 17 36) 0 0.8990 0.9982 10 9 ( 4590 1obo_A) ( 3896 1mb3_A) 0.8921 0.8921 4.6501 ( 2 23 45) 0 0.8996 0.8996 10 10 ( 4590 1obo_A) ( 4066 1mx3_A) 0.5000 0.4545 4.4298 ( 0 4 10) 0 0.8956 0.8154 10 11 ( 4590 1obo_A) ( 4130 1n57_A) 0.8782 0.4988 4.1093 ( 1 16 36) 0 0.8782 0.4988 10 18 ( 4590 1obo_A) ( 4185 1nat ) 0.9758 0.9758 4.7199 ( 1 18 45) 0 0.9758 0.9758 10 10 ( 4590 1obo_A) ( 4323 1nni_1) 0.8889 0.8112 2.5512 ( 1 19 36) 0 0.8889 0.8112 10 11 ( 4590 1obo_A) ( 4433 1ny5_A) 0.8974 0.8974 5.8635 ( 0 16 36) 0 0.8975 0.8975 10 10 ( 4590 1obo_A) ( 4474 1o1y_A) 0.7713 0.4198 6.8861 ( 1 13 28) 0 0.7713 0.4198 10 19 ( 4590 1obo_A) ( 4590 1obo_A) 1.0000 1.0000 0.0000 ( 0 28 45) 0 1.0000 1.0000 10 10 ( 4590 1obo_A) ( 4669 1oi7_A) 0.7998 0.7271 3.7027 ( 0 12 28) 0 0.7998 0.7271 10 11 ( 4590 1obo_A) ( 4787 1ou0_A) 0.5322 0.4534 5.5308 ( 2 11 36) 0 0.8392 0.5244 10 17 ( 4590 1obo_A) ( 4813 1oxb_B) 0.8994 0.8994 3.9577 ( 0 19 36) 0 0.8994 0.8994 10 10 ( 4590 1obo_A) ( 4871 1p2f_A) 0.8992 0.8992 4.2850 ( 0 16 36) 0 0.8992 0.8992 10 10 ( 4590 1obo_A) ( 4905 1p5f_A) 0.8925 0.6898 4.1644 ( 2 23 45) 0 0.8925 0.6898 10 14 ( 4590 1obo_A) ( 4916 1p6u_A) 0.7996 0.7996 4.2164 ( 0 11 28) 0 0.7996 0.7996 10 10 ( 4590 1obo_A) ( 4926 1p80_A) 0.7930 0.6573 4.0569 ( 2 20 36) 0 0.7948 0.6573 10 13 ( 4590 1obo_A) ( 5096 1psd_A) 0.7990 0.8873 5.2703 ( 0 6 28) 0 0.7990 0.8873 10 9 ( 4590 1obo_A) ( 5234 1q7r_A) 0.6236 0.4992 4.9943 ( 4 26 45) 0 0.8872 0.4993 10 18 ( 4590 1obo_A) ( 5289 1qcz_A) 0.7997 0.7997 4.0350 ( 0 12 28) 0 0.7997 0.7997 10 10 ( 4590 1obo_A) ( 5297 1qdl_B) 0.8990 0.5293 4.5472 ( 0 20 36) 0 0.8991 0.5293 10 17 ( 4590 1obo_A) ( 5364 1qkk_A) 0.8958 0.8958 6.6039 ( 0 17 36) 0 0.8963 0.8963 10 10 ( 4590 1obo_A) ( 5397 1qo0_D) 0.8631 0.7343 10.0954 ( 1 17 36) 0 0.8793 0.7414 10 12 ( 4590 1obo_A) ( 5470 1qvz_A) 0.7839 0.4984 5.0050 ( 1 15 28) 0 0.7839 0.4984 10 16 ( 4590 1obo_A) ( 5673 1rli_A) 0.7930 0.7000 4.1226 ( 2 20 36) 0 0.8879 0.7451 10 12 ( 4590 1obo_A) ( 5752 1s2d_A) 0.6235 0.6628 4.8607 ( 1 8 21) 0 0.6235 0.6664 10 9 ( 4590 1obo_A) ( 5785 1say_A) 0.7079 0.4601 5.7070 ( 2 16 36) 0 0.8939 0.4734 10 19 ( 4590 1obo_A) ( 5842 1sqs_A) 0.6881 0.6083 3.7233 ( 3 22 45) 0 0.8534 0.6333 10 14 ( 4590 1obo_A) ( 5920 1tmy ) 0.8996 0.8996 3.6935 ( 0 19 36) 0 0.8996 0.8996 10 10 ( 4590 1obo_A) ( 6242 1vhq_A) 0.8866 0.6403 5.8361 ( 1 19 36) 0 0.8866 0.6403 10 14 ( 4590 1obo_A) ( 6258 1vi6_A) 0.7993 0.6152 4.9218 ( 0 11 28) 0 0.7993 0.6152 10 13 ( 4590 1obo_A) ( 6283 1vjg_A) 0.5992 0.4997 7.1570 ( 0 8 15) 0 0.7984 0.6660 10 12 ( 4590 1obo_A) ( 6496 2nac_A) 0.8184 0.6668 6.1798 ( 1 11 36) 0 0.8768 0.6858 10 13 ( 4590 1obo_A) ( 6624 5nul ) 0.8996 0.8996 3.5754 ( 0 17 36) 0 0.8996 0.8996 10 10 ( 4590 1obo_A) ( 6640 7req_A) 0.8994 0.7497 4.1075 ( 0 20 36) 0 0.8995 0.7498 10 12 ( 4590 1obo_A) ( 6642 7req_B) 0.7924 0.6908 5.3014 ( 3 27 45) 0 0.8990 0.6920 10 13 -------------------------------------------------------------------------------------------------------------------------