------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4669 1oi7_A) ( 6 1a04_A) 0.7271 0.7271 3.8460 ( 0 12 28) 0 0.7271 0.7271 11 11 ( 4669 1oi7_A) ( 26 1a2o_A) 0.8181 0.8998 3.0877 ( 0 16 36) 0 0.8181 0.8998 11 10 ( 4669 1oi7_A) ( 90 1a9x_B) 0.9089 0.5555 3.0345 ( 0 18 45) 0 0.9961 0.6108 11 18 ( 4669 1oi7_A) ( 256 1b00_A) 0.7272 0.7999 2.9409 ( 0 10 28) 0 0.8166 0.8974 11 10 ( 4669 1oi7_A) ( 266 1b1c_A) 0.7271 0.7271 3.6769 ( 0 10 28) 0 0.7271 0.7271 11 11 ( 4669 1oi7_A) ( 428 1bmt_A) 0.7272 0.7272 2.7612 ( 0 12 28) 0 0.8169 0.8169 11 11 ( 4669 1oi7_A) ( 477 1bvy_F) 0.6363 0.7776 3.2989 ( 0 9 21) 0 0.7272 0.8886 11 9 ( 4669 1oi7_A) ( 523 1c4k_A) 0.6362 0.8742 4.5199 ( 0 7 21) 0 0.7262 0.9948 11 8 ( 4669 1oi7_A) ( 562 1ccw_A) 0.8180 0.8997 3.5308 ( 0 16 36) 0 0.8180 0.8997 11 10 ( 4669 1oi7_A) ( 745 1d4a_A) 0.8033 0.5967 5.8052 ( 1 16 36) 0 0.8033 0.5967 11 15 ( 4669 1oi7_A) ( 786 1dbw_A) 0.8181 0.8999 2.7033 ( 0 14 36) 0 0.8181 0.8999 11 10 ( 4669 1oi7_A) ( 793 1dcf_A) 0.8181 0.8998 3.0510 ( 0 14 36) 0 0.8181 0.8998 11 10 ( 4669 1oi7_A) ( 971 1dxy ) 0.7271 0.8885 3.7070 ( 0 7 28) 0 0.7271 0.8885 11 9 ( 4669 1oi7_A) ( 980 1dz3_A) 0.6363 0.7000 2.5412 ( 0 7 21) 0 0.7264 0.7986 11 10 ( 4669 1oi7_A) ( 1042 1e5d_A) 0.7045 0.7646 3.3480 ( 1 12 28) 0 0.7269 0.7994 11 10 ( 4669 1oi7_A) ( 1177 1eiw_A) 0.6836 0.7870 4.2389 ( 1 10 28) 0 0.6836 0.7870 11 9 ( 4669 1oi7_A) ( 1252 1es9_A) 0.5454 0.5000 3.7644 ( 0 5 15) 0 0.7972 0.7361 11 12 ( 4669 1oi7_A) ( 1253 1esc ) 0.8145 0.5290 7.1898 ( 0 16 36) 0 0.8145 0.5290 11 17 ( 4669 1oi7_A) ( 1266 1euc_B) 0.9090 0.8333 2.4602 ( 0 16 45) 0 0.9090 0.8333 11 12 ( 4669 1oi7_A) ( 1379 1f2v_A) 0.8177 0.5624 4.2537 ( 0 11 36) 0 0.8177 0.5624 11 16 ( 4669 1oi7_A) ( 1397 1f4p_A) 0.5849 0.6629 3.8618 ( 1 8 21) 0 0.7267 0.8872 11 9 ( 4669 1oi7_A) ( 1443 1f8y_A) 0.4543 0.4543 7.7457 ( 0 2 10) 0 0.5454 0.5454 11 11 ( 4669 1oi7_A) ( 1516 1fjg_B) 0.3634 0.3332 9.8241 ( 0 3 6) 0 0.3636 0.3333 11 12 ( 4669 1oi7_A) ( 1547 1flc_A) 0.6362 0.3889 4.3766 ( 0 5 21) 0 0.6362 0.3889 11 18 ( 4669 1oi7_A) ( 1659 1fye_A) 0.4543 0.2778 7.7295 ( 0 1 10) 0 0.8938 0.5542 11 18 ( 4669 1oi7_A) ( 1662 1fyx_A) 0.7044 0.7644 4.2123 ( 1 12 28) 0 0.7044 0.7644 11 10 ( 4669 1oi7_A) ( 1700 1g2i_A) 0.4545 0.3571 5.1511 ( 0 2 10) 0 0.8040 0.6385 11 14 ( 4669 1oi7_A) ( 1803 1gdh_A) 0.8175 0.8989 4.7199 ( 0 8 36) 0 0.8175 0.8989 11 10 ( 4669 1oi7_A) ( 1901 1gpm_A) 0.4545 0.3125 3.6081 ( 0 1 10) 0 0.5847 0.4282 11 16 ( 4669 1oi7_A) ( 2027 1h05_A) 0.6363 0.6363 2.7737 ( 0 5 21) 0 0.7271 0.7271 11 11 ( 4669 1oi7_A) ( 2427 1i7q_B) 0.4545 0.2778 3.4129 ( 0 1 10) 0 0.5451 0.4573 11 18 ( 4669 1oi7_A) ( 2470 1iex_A) 0.8179 0.7498 3.7660 ( 0 10 36) 0 0.8179 0.7498 11 12 ( 4669 1oi7_A) ( 2714 1j2y_A) 0.6363 0.6363 3.2796 ( 0 7 21) 0 0.7268 0.7268 11 11 ( 4669 1oi7_A) ( 2729 1j4a_A) 0.8176 0.8991 4.4930 ( 0 13 36) 0 0.8176 0.8991 11 10 ( 4669 1oi7_A) ( 2809 1jbe_A) 0.8181 0.8999 2.6271 ( 0 12 36) 0 0.8181 0.8999 11 10 ( 4669 1oi7_A) ( 3034 1jrl_A) 0.8169 0.8979 5.5031 ( 0 11 36) 0 0.8169 0.8979 11 10 ( 4669 1oi7_A) ( 3073 1jvn_A) 0.7269 0.4210 4.5351 ( 0 13 28) 0 0.8161 0.5119 11 19 ( 4669 1oi7_A) ( 3189 1k66_A) 0.8180 0.8180 3.3620 ( 0 12 36) 0 0.8180 0.8180 11 11 ( 4669 1oi7_A) ( 3190 1k68_A) 0.8180 0.8998 3.2100 ( 0 12 36) 0 0.8180 0.8998 11 10 ( 4669 1oi7_A) ( 3199 1k7c_A) 0.4544 0.3333 7.0820 ( 0 3 10) 0 0.8153 0.5994 11 15 ( 4669 1oi7_A) ( 3234 1k9v_F) 0.4545 0.2778 1.9973 ( 0 3 10) 0 0.7043 0.4779 11 18 ( 4669 1oi7_A) ( 3238 1ka9_H) 0.5455 0.4531 3.9148 ( 2 12 28) 0 0.5455 0.4531 11 16 ( 4669 1oi7_A) ( 3295 1kgs_A) 0.7272 0.7999 2.5848 ( 0 8 28) 0 0.7272 0.7999 11 10 ( 4669 1oi7_A) ( 3412 1krw_A) 0.8180 0.8998 3.1566 ( 0 11 36) 0 0.8180 0.8998 11 10 ( 4669 1oi7_A) ( 3462 1kwg_A) 0.7272 0.5000 3.0716 ( 0 10 28) 0 0.7272 0.5000 11 16 ( 4669 1oi7_A) ( 3560 1l7d_A) 0.4545 0.2941 2.9088 ( 0 3 10) 0 0.6829 0.4649 11 17 ( 4669 1oi7_A) ( 3581 1l9x_A) 0.6961 0.3470 3.6483 ( 1 11 28) 0 0.6961 0.3494 11 23 ( 4669 1oi7_A) ( 3632 1li4_A) 0.5454 0.3333 4.0565 ( 0 7 15) 0 0.7877 0.5677 11 18 ( 4669 1oi7_A) ( 3801 1m2e_A) 0.7272 0.8887 3.1291 ( 0 10 28) 0 0.7272 0.8887 11 9 ( 4669 1oi7_A) ( 3896 1mb3_A) 0.8181 0.8999 2.4991 ( 0 15 36) 0 0.8181 0.8999 11 10 ( 4669 1oi7_A) ( 4066 1mx3_A) 0.7647 0.7647 4.9966 ( 1 11 36) 0 0.7647 0.7647 11 11 ( 4669 1oi7_A) ( 4130 1n57_A) 0.5630 0.4531 4.4980 ( 2 12 36) 0 0.6362 0.4719 11 18 ( 4669 1oi7_A) ( 4185 1nat ) 0.8181 0.8999 2.6251 ( 0 12 36) 0 0.8181 0.8999 11 10 ( 4669 1oi7_A) ( 4323 1nni_1) 0.8178 0.8178 4.1893 ( 0 15 36) 0 0.8178 0.8178 11 11 ( 4669 1oi7_A) ( 4433 1ny5_A) 0.7272 0.7999 2.5916 ( 0 7 28) 0 0.8137 0.8929 11 10 ( 4669 1oi7_A) ( 4474 1o1y_A) 0.3636 0.2105 4.7514 ( 0 0 6) 0 0.3636 0.2624 11 19 ( 4669 1oi7_A) ( 4590 1obo_A) 0.7271 0.7998 3.7027 ( 0 12 28) 0 0.7271 0.7998 11 10 ( 4669 1oi7_A) ( 4669 1oi7_A) 1.0000 1.0000 0.0000 ( 0 25 55) 0 1.0000 1.0000 11 11 ( 4669 1oi7_A) ( 4787 1ou0_A) 0.8177 0.5294 4.3763 ( 0 11 36) 0 0.9077 0.5881 11 17 ( 4669 1oi7_A) ( 4813 1oxb_B) 0.7272 0.8000 2.3605 ( 0 10 28) 0 0.7272 0.8000 11 10 ( 4669 1oi7_A) ( 4871 1p2f_A) 0.8180 0.8997 3.3280 ( 0 10 36) 0 0.8180 0.8997 11 10 ( 4669 1oi7_A) ( 4905 1p5f_A) 0.4349 0.4148 3.6901 ( 2 9 28) 0 0.9069 0.7136 11 14 ( 4669 1oi7_A) ( 4916 1p6u_A) 0.8180 0.8998 3.2271 ( 0 12 36) 0 0.8180 0.8998 11 10 ( 4669 1oi7_A) ( 4926 1p80_A) 0.5745 0.5310 3.2532 ( 2 13 28) 0 0.7954 0.6821 11 13 ( 4669 1oi7_A) ( 5096 1psd_A) 0.8174 0.9979 4.8555 ( 0 7 36) 0 0.8174 0.9979 11 9 ( 4669 1oi7_A) ( 5234 1q7r_A) 0.8174 0.4999 4.8713 ( 0 16 36) 0 0.8174 0.5031 11 18 ( 4669 1oi7_A) ( 5289 1qcz_A) 0.8181 0.8998 3.1038 ( 0 14 36) 0 0.8181 0.8998 11 10 ( 4669 1oi7_A) ( 5297 1qdl_B) 0.7272 0.4706 2.9618 ( 0 10 28) 0 0.7272 0.4706 11 17 ( 4669 1oi7_A) ( 5364 1qkk_A) 0.7272 0.7999 2.5797 ( 0 9 28) 0 0.8127 0.8913 11 10 ( 4669 1oi7_A) ( 5397 1qo0_D) 0.7212 0.6627 9.4553 ( 0 10 28) 0 0.7212 0.6627 11 12 ( 4669 1oi7_A) ( 5470 1qvz_A) 0.7269 0.4999 4.6776 ( 0 12 28) 0 0.7979 0.5592 11 16 ( 4669 1oi7_A) ( 5673 1rli_A) 0.7045 0.6516 3.9512 ( 1 12 28) 0 0.7865 0.7289 11 12 ( 4669 1oi7_A) ( 5752 1s2d_A) 0.3635 0.4442 8.0066 ( 0 0 6) 0 0.4543 0.5548 11 9 ( 4669 1oi7_A) ( 5785 1say_A) 0.5454 0.3158 4.0606 ( 0 3 15) 0 0.8005 0.4725 11 19 ( 4669 1oi7_A) ( 5842 1sqs_A) 0.6287 0.5620 4.4227 ( 2 14 36) 0 0.6954 0.5620 11 14 ( 4669 1oi7_A) ( 5920 1tmy ) 0.8181 0.8999 2.3272 ( 0 14 36) 0 0.8181 0.8999 11 10 ( 4669 1oi7_A) ( 6242 1vhq_A) 0.6960 0.5614 3.8176 ( 1 11 28) 0 0.6960 0.5614 11 14 ( 4669 1oi7_A) ( 6258 1vi6_A) 0.4545 0.3846 3.2038 ( 0 3 10) 0 0.5186 0.4751 11 13 ( 4669 1oi7_A) ( 6283 1vjg_A) 0.8174 0.7495 4.7890 ( 0 11 36) 0 0.8174 0.7495 11 12 ( 4669 1oi7_A) ( 6496 2nac_A) 0.8175 0.6920 4.7846 ( 0 9 36) 0 0.9070 0.7683 11 13 ( 4669 1oi7_A) ( 6624 5nul ) 0.5116 0.5180 4.2824 ( 3 16 36) 0 0.7267 0.7991 11 10 ( 4669 1oi7_A) ( 6640 7req_A) 0.8181 0.7499 3.1024 ( 0 16 36) 0 0.8181 0.7499 11 12 ( 4669 1oi7_A) ( 6642 7req_B) 0.8180 0.6922 3.3875 ( 0 12 36) 0 0.8180 0.6922 11 13 -------------------------------------------------------------------------------------------------------------------------