------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4787 1ou0_A) ( 6 1a04_A) 0.5245 0.7789 3.7275 ( 1 12 36) 0 0.5245 0.7789 17 11 ( 4787 1ou0_A) ( 26 1a2o_A) 0.5718 0.8406 3.8335 ( 2 20 45) 0 0.5718 0.8829 17 10 ( 4787 1ou0_A) ( 90 1a9x_B) 0.2941 0.2778 3.9748 ( 0 2 10) 0 0.5293 0.5034 17 18 ( 4787 1ou0_A) ( 256 1b00_A) 0.5586 0.7649 4.4534 ( 2 17 45) 0 0.5881 0.9975 17 10 ( 4787 1ou0_A) ( 266 1b1c_A) 0.5426 0.6809 6.4939 ( 2 15 45) 0 0.5426 0.6809 17 11 ( 4787 1ou0_A) ( 428 1bmt_A) 0.2941 0.4545 4.0870 ( 0 3 10) 0 0.3214 0.4545 17 11 ( 4787 1ou0_A) ( 477 1bvy_F) 0.3529 0.6650 7.5559 ( 0 8 15) 0 0.4832 0.8306 17 9 ( 4787 1ou0_A) ( 523 1c4k_A) 0.4343 0.5818 5.1917 ( 2 12 28) 0 0.4428 0.7792 17 8 ( 4787 1ou0_A) ( 562 1ccw_A) 0.4468 0.5179 5.5019 ( 3 16 36) 0 0.5764 0.8750 17 10 ( 4787 1ou0_A) ( 745 1d4a_A) 0.3245 0.3382 6.1752 ( 3 11 21) 0 0.5244 0.5907 17 15 ( 4787 1ou0_A) ( 786 1dbw_A) 0.5861 0.9711 4.1959 ( 1 17 45) 0 0.5861 0.9711 17 10 ( 4787 1ou0_A) ( 793 1dcf_A) 0.5258 0.8543 3.7212 ( 1 13 36) 0 0.5637 0.8543 17 10 ( 4787 1ou0_A) ( 971 1dxy ) 0.5293 0.9985 4.4758 ( 0 11 36) 0 0.5293 0.9985 17 9 ( 4787 1ou0_A) ( 980 1dz3_A) 0.5267 0.8649 3.5968 ( 1 14 36) 0 0.5267 0.8649 17 10 ( 4787 1ou0_A) ( 1042 1e5d_A) 0.5314 0.6627 6.0124 ( 2 14 45) 0 0.5314 0.8182 17 10 ( 4787 1ou0_A) ( 1177 1eiw_A) 0.4595 0.5529 4.2153 ( 3 17 36) 0 0.4686 0.8454 17 9 ( 4787 1ou0_A) ( 1252 1es9_A) 0.4501 0.4850 3.3654 ( 4 20 45) 0 0.6452 0.9061 17 12 ( 4787 1ou0_A) ( 1253 1esc ) 0.5264 0.5264 6.7777 ( 1 14 36) 0 0.5265 0.5265 17 17 ( 4787 1ou0_A) ( 1266 1euc_B) 0.5882 0.8330 3.8793 ( 0 17 45) 0 0.6781 0.9151 17 12 ( 4787 1ou0_A) ( 1379 1f2v_A) 0.9409 0.9997 2.8976 ( 1 86 120) 0 0.9409 0.9997 17 16 ( 4787 1ou0_A) ( 1397 1f4p_A) 0.3727 0.3974 5.4119 ( 3 12 36) 0 0.5223 0.8742 17 9 ( 4787 1ou0_A) ( 1443 1f8y_A) 0.2748 0.2790 4.8806 ( 5 14 36) 0 0.5172 0.7325 17 11 ( 4787 1ou0_A) ( 1516 1fjg_B) 0.4691 0.6583 3.5735 ( 1 14 28) 0 0.5280 0.7421 17 12 ( 4787 1ou0_A) ( 1547 1flc_A) 0.5281 0.4990 3.6772 ( 1 17 36) 0 0.5293 0.4999 17 18 ( 4787 1ou0_A) ( 1659 1fye_A) 0.2497 0.2420 7.5543 ( 2 6 10) 0 0.5866 0.5543 17 18 ( 4787 1ou0_A) ( 1662 1fyx_A) 0.3846 0.5073 5.1104 ( 2 11 21) 0 0.4593 0.6998 17 10 ( 4787 1ou0_A) ( 1700 1g2i_A) 0.2900 0.3467 7.5148 ( 1 6 10) 0 0.5093 0.5434 17 14 ( 4787 1ou0_A) ( 1803 1gdh_A) 0.4932 0.6472 5.0212 ( 1 7 36) 0 0.4932 0.6472 17 10 ( 4787 1ou0_A) ( 1901 1gpm_A) 0.2941 0.3125 7.0387 ( 0 7 10) 0 0.5718 0.5923 17 16 ( 4787 1ou0_A) ( 2027 1h05_A) 0.5294 0.8177 4.2705 ( 0 4 36) 0 0.5294 0.8177 17 11 ( 4787 1ou0_A) ( 2427 1i7q_B) 0.2941 0.2778 7.7153 ( 0 2 10) 0 0.5258 0.4973 17 18 ( 4787 1ou0_A) ( 2470 1iex_A) 0.5855 0.8181 4.4960 ( 1 16 45) 0 0.5855 0.8181 17 12 ( 4787 1ou0_A) ( 2714 1j2y_A) 0.5257 0.7881 5.1834 ( 1 13 36) 0 0.5257 0.7881 17 11 ( 4787 1ou0_A) ( 2729 1j4a_A) 0.5428 0.6998 4.8802 ( 2 15 45) 0 0.5428 0.7997 17 10 ( 4787 1ou0_A) ( 2809 1jbe_A) 0.5868 0.9801 4.6238 ( 1 19 45) 0 0.5868 0.9801 17 10 ( 4787 1ou0_A) ( 3034 1jrl_A) 0.3274 0.3469 4.5987 ( 2 7 28) 0 0.5273 0.8715 17 10 ( 4787 1ou0_A) ( 3073 1jvn_A) 0.2859 0.2583 7.0822 ( 1 5 10) 0 0.5767 0.5196 17 19 ( 4787 1ou0_A) ( 3189 1k66_A) 0.5882 0.9086 3.8369 ( 0 15 45) 0 0.5882 0.9086 17 11 ( 4787 1ou0_A) ( 3190 1k68_A) 0.5882 0.9995 3.3323 ( 0 15 45) 0 0.5882 0.9995 17 10 ( 4787 1ou0_A) ( 3199 1k7c_A) 0.4833 0.5234 3.8883 ( 2 13 36) 0 0.4868 0.5288 17 15 ( 4787 1ou0_A) ( 3234 1k9v_F) 0.2941 0.2778 4.1282 ( 0 5 10) 0 0.5881 0.5554 17 18 ( 4787 1ou0_A) ( 3238 1ka9_H) 0.2353 0.2500 3.5380 ( 0 2 6) 0 0.5880 0.6247 17 16 ( 4787 1ou0_A) ( 3295 1kgs_A) 0.5225 0.8201 3.7586 ( 1 11 36) 0 0.5292 0.8968 17 10 ( 4787 1ou0_A) ( 3412 1krw_A) 0.5882 0.9989 4.0770 ( 0 16 45) 0 0.5882 0.9989 17 10 ( 4787 1ou0_A) ( 3462 1kwg_A) 0.2353 0.2500 3.6926 ( 0 4 6) 0 0.5882 0.6249 17 16 ( 4787 1ou0_A) ( 3560 1l7d_A) 0.2353 0.2353 4.1893 ( 0 1 6) 0 0.6177 0.6177 17 17 ( 4787 1ou0_A) ( 3581 1l9x_A) 0.2941 0.2174 9.4305 ( 0 7 10) 0 0.4617 0.4222 17 23 ( 4787 1ou0_A) ( 3632 1li4_A) 0.3339 0.3186 3.2370 ( 1 5 15) 0 0.3810 0.3769 17 18 ( 4787 1ou0_A) ( 3801 1m2e_A) 0.5273 0.9543 4.8219 ( 1 15 36) 0 0.5273 0.9543 17 9 ( 4787 1ou0_A) ( 3896 1mb3_A) 0.5640 0.7930 4.1414 ( 2 18 45) 0 0.5640 0.8996 17 10 ( 4787 1ou0_A) ( 4066 1mx3_A) 0.5193 0.7449 5.6528 ( 1 10 36) 0 0.5193 0.7449 17 11 ( 4787 1ou0_A) ( 4130 1n57_A) 0.2941 0.2778 4.3115 ( 0 5 10) 0 0.5009 0.4900 17 18 ( 4787 1ou0_A) ( 4185 1nat ) 0.5882 0.9992 3.7973 ( 0 12 45) 0 0.5882 0.9992 17 10 ( 4787 1ou0_A) ( 4323 1nni_1) 0.4667 0.6958 4.8744 ( 1 11 28) 0 0.5604 0.7449 17 11 ( 4787 1ou0_A) ( 4433 1ny5_A) 0.5818 0.9231 6.5011 ( 1 13 45) 0 0.5818 0.9231 17 10 ( 4787 1ou0_A) ( 4474 1o1y_A) 0.2353 0.2105 8.0299 ( 0 2 6) 0 0.5399 0.5167 17 19 ( 4787 1ou0_A) ( 4590 1obo_A) 0.4686 0.5228 6.1577 ( 3 16 45) 0 0.5244 0.8392 17 10 ( 4787 1ou0_A) ( 4669 1oi7_A) 0.5294 0.8177 4.3763 ( 0 11 36) 0 0.5881 0.9077 17 11 ( 4787 1ou0_A) ( 4787 1ou0_A) 1.0000 1.0000 0.0000 ( 0 109 136) 0 1.0000 1.0000 17 17 ( 4787 1ou0_A) ( 4813 1oxb_B) 0.5294 0.8995 3.8359 ( 0 12 36) 0 0.5294 0.8995 17 10 ( 4787 1ou0_A) ( 4871 1p2f_A) 0.5586 0.7650 3.9345 ( 2 17 45) 0 0.5842 0.9486 17 10 ( 4787 1ou0_A) ( 4905 1p5f_A) 0.2941 0.3571 4.3933 ( 0 3 10) 0 0.7169 0.8204 17 14 ( 4787 1ou0_A) ( 4916 1p6u_A) 0.5273 0.8722 4.5155 ( 1 15 36) 0 0.5273 0.8722 17 10 ( 4787 1ou0_A) ( 4926 1p80_A) 0.3940 0.4345 4.2812 ( 3 14 28) 0 0.4192 0.5139 17 13 ( 4787 1ou0_A) ( 5096 1psd_A) 0.4117 0.7773 4.5605 ( 0 2 21) 0 0.4117 0.7773 17 9 ( 4787 1ou0_A) ( 5234 1q7r_A) 0.2941 0.2778 4.0849 ( 0 5 10) 0 0.5872 0.5548 17 18 ( 4787 1ou0_A) ( 5289 1qcz_A) 0.5267 0.8646 4.2851 ( 1 14 36) 0 0.5267 0.8646 17 10 ( 4787 1ou0_A) ( 5297 1qdl_B) 0.3393 0.3393 8.6845 ( 2 11 15) 0 0.5716 0.5716 17 17 ( 4787 1ou0_A) ( 5364 1qkk_A) 0.5850 0.9587 6.7310 ( 1 16 45) 0 0.5850 0.9587 17 10 ( 4787 1ou0_A) ( 5397 1qo0_D) 0.2941 0.4167 3.7765 ( 0 2 10) 0 0.5498 0.7439 17 12 ( 4787 1ou0_A) ( 5470 1qvz_A) 0.5281 0.5607 4.4538 ( 1 17 36) 0 0.5872 0.6237 17 16 ( 4787 1ou0_A) ( 5673 1rli_A) 0.5266 0.7346 5.3999 ( 1 14 36) 0 0.5392 0.7346 17 12 ( 4787 1ou0_A) ( 5752 1s2d_A) 0.2941 0.5555 4.7317 ( 0 3 10) 0 0.4698 0.8701 17 9 ( 4787 1ou0_A) ( 5785 1say_A) 0.3529 0.3158 4.8521 ( 0 7 15) 0 0.5064 0.4600 17 19 ( 4787 1ou0_A) ( 5842 1sqs_A) 0.4001 0.4126 5.8469 ( 4 17 45) 0 0.5764 0.6848 17 14 ( 4787 1ou0_A) ( 5920 1tmy ) 0.5865 0.9766 4.0190 ( 1 18 45) 0 0.5865 0.9766 17 10 ( 4787 1ou0_A) ( 6242 1vhq_A) 0.3507 0.4227 10.0495 ( 1 9 15) 0 0.5717 0.6738 17 14 ( 4787 1ou0_A) ( 6258 1vi6_A) 0.5195 0.6573 4.2297 ( 2 20 36) 0 0.5284 0.6884 17 13 ( 4787 1ou0_A) ( 6283 1vjg_A) 0.2941 0.4166 5.9991 ( 0 3 10) 0 0.5681 0.7406 17 12 ( 4787 1ou0_A) ( 6496 2nac_A) 0.2941 0.3846 4.6184 ( 0 5 10) 0 0.6255 0.7744 17 13 ( 4787 1ou0_A) ( 6624 5nul ) 0.3529 0.5999 4.1975 ( 0 3 15) 0 0.5224 0.8191 17 10 ( 4787 1ou0_A) ( 6640 7req_A) 0.2941 0.4166 4.9711 ( 0 4 10) 0 0.5291 0.7484 17 12 ( 4787 1ou0_A) ( 6642 7req_B) 0.5265 0.6815 6.2760 ( 1 14 36) 0 0.5265 0.6815 17 13 -------------------------------------------------------------------------------------------------------------------------