------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4813 1oxb_B) ( 6 1a04_A) 0.9999 0.9090 2.1071 ( 0 24 45) 0 0.9999 0.9090 10 11 ( 4813 1oxb_B) ( 26 1a2o_A) 0.9999 0.9999 2.4059 ( 0 24 45) 0 0.9999 0.9999 10 10 ( 4813 1oxb_B) ( 90 1a9x_B) 0.8998 0.5000 3.0775 ( 0 15 36) 0 0.8998 0.5227 10 18 ( 4813 1oxb_B) ( 256 1b00_A) 0.9997 0.9997 3.0430 ( 0 24 45) 0 0.9997 0.9997 10 10 ( 4813 1oxb_B) ( 266 1b1c_A) 0.8992 0.8177 4.4028 ( 0 14 36) 0 0.9692 0.8895 10 11 ( 4813 1oxb_B) ( 428 1bmt_A) 0.9996 0.9088 3.2382 ( 0 24 45) 0 0.9996 0.9088 10 11 ( 4813 1oxb_B) ( 477 1bvy_F) 0.7998 0.8885 3.6410 ( 0 13 28) 0 0.7999 0.8887 10 9 ( 4813 1oxb_B) ( 523 1c4k_A) 0.6998 0.8744 4.1506 ( 0 10 21) 0 0.6998 0.8744 10 8 ( 4813 1oxb_B) ( 562 1ccw_A) 0.8998 0.8998 2.9311 ( 0 18 36) 0 0.8998 0.8998 10 10 ( 4813 1oxb_B) ( 745 1d4a_A) 0.8916 0.5989 4.6355 ( 1 21 36) 0 0.9881 0.6651 10 15 ( 4813 1oxb_B) ( 786 1dbw_A) 0.9912 0.9912 2.0113 ( 1 23 45) 0 0.9912 0.9912 10 10 ( 4813 1oxb_B) ( 793 1dcf_A) 0.9999 0.9999 1.8143 ( 0 26 45) 0 0.9999 0.9999 10 10 ( 4813 1oxb_B) ( 971 1dxy ) 0.7999 0.8887 3.2582 ( 0 11 28) 0 0.7999 0.8887 10 9 ( 4813 1oxb_B) ( 980 1dz3_A) 0.9000 0.9000 2.0507 ( 0 18 36) 0 0.9000 0.9000 10 10 ( 4813 1oxb_B) ( 1042 1e5d_A) 0.8181 0.8181 4.2302 ( 2 19 45) 0 0.9904 0.9904 10 10 ( 4813 1oxb_B) ( 1177 1eiw_A) 0.5045 0.5289 2.7749 ( 1 6 15) 0 0.7562 0.7926 10 9 ( 4813 1oxb_B) ( 1252 1es9_A) 0.8763 0.7752 5.3583 ( 2 22 45) 0 0.9958 0.8316 10 12 ( 4813 1oxb_B) ( 1253 1esc ) 0.9891 0.5874 7.3600 ( 0 22 45) 0 0.9891 0.5874 10 17 ( 4813 1oxb_B) ( 1266 1euc_B) 0.9812 0.8256 3.5018 ( 1 19 45) 0 0.9812 0.8256 10 12 ( 4813 1oxb_B) ( 1379 1f2v_A) 0.7930 0.5931 4.1718 ( 2 18 45) 0 0.8641 0.5931 10 16 ( 4813 1oxb_B) ( 1397 1f4p_A) 0.7997 0.8884 3.8381 ( 0 14 28) 0 0.8781 0.9641 10 9 ( 4813 1oxb_B) ( 1443 1f8y_A) 0.5045 0.4789 2.9829 ( 1 6 15) 0 0.6469 0.6014 10 11 ( 4813 1oxb_B) ( 1516 1fjg_B) 0.6230 0.5733 6.7427 ( 1 7 28) 0 0.6230 0.5733 10 12 ( 4813 1oxb_B) ( 1547 1flc_A) 0.6997 0.3889 4.5618 ( 0 7 21) 0 0.7984 0.4444 10 18 ( 4813 1oxb_B) ( 1659 1fye_A) 0.6993 0.3889 5.6785 ( 0 8 21) 0 0.8783 0.4988 10 18 ( 4813 1oxb_B) ( 1662 1fyx_A) 0.6237 0.6237 3.6808 ( 2 14 28) 0 0.6737 0.6737 10 10 ( 4813 1oxb_B) ( 1700 1g2i_A) 0.7000 0.5000 2.5545 ( 0 10 21) 0 0.7998 0.6065 10 14 ( 4813 1oxb_B) ( 1803 1gdh_A) 0.8540 0.8540 4.4809 ( 1 13 36) 0 0.8969 0.8969 10 10 ( 4813 1oxb_B) ( 1901 1gpm_A) 0.7999 0.5000 2.6018 ( 0 13 28) 0 0.8991 0.5624 10 16 ( 4813 1oxb_B) ( 2027 1h05_A) 0.8998 0.8181 2.8648 ( 0 9 36) 0 0.8998 0.8181 10 11 ( 4813 1oxb_B) ( 2427 1i7q_B) 0.5735 0.4531 2.8913 ( 3 18 36) 0 0.7634 0.4606 10 18 ( 4813 1oxb_B) ( 2470 1iex_A) 0.9994 0.8331 3.5158 ( 0 17 45) 0 0.9994 0.8331 10 12 ( 4813 1oxb_B) ( 2714 1j2y_A) 0.8996 0.8179 3.6870 ( 0 13 36) 0 0.8996 0.8179 10 11 ( 4813 1oxb_B) ( 2729 1j4a_A) 0.9863 0.9863 4.3157 ( 1 21 45) 0 0.9863 0.9863 10 10 ( 4813 1oxb_B) ( 2809 1jbe_A) 0.9999 0.9999 1.8291 ( 0 23 45) 0 0.9999 0.9999 10 10 ( 4813 1oxb_B) ( 3034 1jrl_A) 0.8981 0.8981 5.4078 ( 0 14 36) 0 0.8981 0.8981 10 10 ( 4813 1oxb_B) ( 3073 1jvn_A) 0.7997 0.4210 3.9789 ( 0 15 28) 0 0.7997 0.4550 10 19 ( 4813 1oxb_B) ( 3189 1k66_A) 0.9998 0.9090 2.6139 ( 0 20 45) 0 0.9998 0.9090 10 11 ( 4813 1oxb_B) ( 3190 1k68_A) 0.9999 0.9999 2.4931 ( 0 20 45) 0 0.9999 0.9999 10 10 ( 4813 1oxb_B) ( 3199 1k7c_A) 0.8990 0.5999 4.6314 ( 0 17 36) 0 0.8990 0.5999 10 15 ( 4813 1oxb_B) ( 3234 1k9v_F) 0.7996 0.4444 4.2272 ( 0 16 28) 0 0.8978 0.4999 10 18 ( 4813 1oxb_B) ( 3238 1ka9_H) 0.7993 0.4999 4.8101 ( 0 15 28) 0 0.7993 0.5221 10 16 ( 4813 1oxb_B) ( 3295 1kgs_A) 0.9922 0.9922 3.1815 ( 1 24 45) 0 0.9922 0.9922 10 10 ( 4813 1oxb_B) ( 3412 1krw_A) 0.9846 0.9846 3.2154 ( 1 20 45) 0 0.9846 0.9846 10 10 ( 4813 1oxb_B) ( 3462 1kwg_A) 0.8727 0.5597 3.4094 ( 1 15 36) 0 0.8780 0.5603 10 16 ( 4813 1oxb_B) ( 3560 1l7d_A) 0.8770 0.5277 5.4961 ( 1 16 36) 0 0.9970 0.5880 10 17 ( 4813 1oxb_B) ( 3581 1l9x_A) 0.7758 0.3885 4.9409 ( 2 19 36) 0 0.9040 0.4329 10 23 ( 4813 1oxb_B) ( 3632 1li4_A) 0.8780 0.4988 4.4657 ( 1 16 36) 0 0.8982 0.5370 10 18 ( 4813 1oxb_B) ( 3801 1m2e_A) 0.8998 0.9997 2.9422 ( 0 19 36) 0 0.8998 0.9997 10 9 ( 4813 1oxb_B) ( 3896 1mb3_A) 0.9999 0.9999 1.3701 ( 0 24 45) 0 0.9999 0.9999 10 10 ( 4813 1oxb_B) ( 4066 1mx3_A) 0.8537 0.7883 4.8536 ( 1 13 36) 0 0.8974 0.8166 10 11 ( 4813 1oxb_B) ( 4130 1n57_A) 0.4000 0.2222 4.3751 ( 0 3 6) 0 0.7084 0.4825 10 18 ( 4813 1oxb_B) ( 4185 1nat ) 0.9999 0.9999 1.8866 ( 0 19 45) 0 0.9999 0.9999 10 10 ( 4813 1oxb_B) ( 4323 1nni_1) 0.8885 0.8110 3.9057 ( 1 19 36) 0 0.8994 0.8178 10 11 ( 4813 1oxb_B) ( 4433 1ny5_A) 0.9973 0.9973 5.1813 ( 0 19 45) 0 0.9973 0.9973 10 10 ( 4813 1oxb_B) ( 4474 1o1y_A) 0.4245 0.3590 3.2739 ( 3 13 28) 0 0.4245 0.3590 10 19 ( 4813 1oxb_B) ( 4590 1obo_A) 0.8994 0.8994 3.9577 ( 0 19 36) 0 0.8994 0.8994 10 10 ( 4813 1oxb_B) ( 4669 1oi7_A) 0.8000 0.7272 2.3605 ( 0 10 28) 0 0.8000 0.7272 10 11 ( 4813 1oxb_B) ( 4787 1ou0_A) 0.8995 0.5294 3.8359 ( 0 12 36) 0 0.8995 0.5294 10 17 ( 4813 1oxb_B) ( 4813 1oxb_B) 1.0000 1.0000 0.0000 ( 0 28 45) 0 1.0000 1.0000 10 10 ( 4813 1oxb_B) ( 4871 1p2f_A) 0.9998 0.9998 2.5143 ( 0 22 45) 0 0.9998 0.9998 10 10 ( 4813 1oxb_B) ( 4905 1p5f_A) 0.5991 0.4284 7.3793 ( 0 9 15) 0 0.8723 0.6494 10 14 ( 4813 1oxb_B) ( 4916 1p6u_A) 0.8999 0.8999 2.6422 ( 0 17 36) 0 0.8999 0.8999 10 10 ( 4813 1oxb_B) ( 4926 1p80_A) 0.7797 0.6097 3.9014 ( 1 14 28) 0 0.7797 0.6420 10 13 ( 4813 1oxb_B) ( 5096 1psd_A) 0.7995 0.8880 4.4719 ( 0 6 28) 0 0.8930 0.9882 10 9 ( 4813 1oxb_B) ( 5234 1q7r_A) 0.8989 0.4999 4.7369 ( 0 17 36) 0 0.8989 0.5465 10 18 ( 4813 1oxb_B) ( 5289 1qcz_A) 0.8996 0.8996 3.5888 ( 0 15 36) 0 0.8996 0.8996 10 10 ( 4813 1oxb_B) ( 5297 1qdl_B) 0.8998 0.5294 2.8916 ( 0 14 36) 0 0.8998 0.5394 10 17 ( 4813 1oxb_B) ( 5364 1qkk_A) 0.9950 0.9950 6.0251 ( 0 22 45) 0 0.9950 0.9950 10 10 ( 4813 1oxb_B) ( 5397 1qo0_D) 0.8827 0.7429 9.4791 ( 0 18 36) 0 0.8827 0.7429 10 12 ( 4813 1oxb_B) ( 5470 1qvz_A) 0.6473 0.5155 4.7475 ( 3 21 36) 0 0.6610 0.5155 10 16 ( 4813 1oxb_B) ( 5673 1rli_A) 0.8860 0.7443 3.8729 ( 1 18 36) 0 0.8860 0.7443 10 12 ( 4813 1oxb_B) ( 5752 1s2d_A) 0.5385 0.5736 4.6961 ( 1 7 15) 0 0.5385 0.5736 10 9 ( 4813 1oxb_B) ( 5785 1say_A) 0.5994 0.3158 6.7850 ( 0 5 15) 0 0.9757 0.5253 10 19 ( 4813 1oxb_B) ( 5842 1sqs_A) 0.7084 0.5891 4.1144 ( 2 16 36) 0 0.8643 0.6357 10 14 ( 4813 1oxb_B) ( 5920 1tmy ) 0.9999 0.9999 1.3096 ( 0 24 45) 0 0.9999 0.9999 10 10 ( 4813 1oxb_B) ( 6242 1vhq_A) 0.7564 0.6066 4.4517 ( 2 18 36) 0 0.9047 0.6930 10 14 ( 4813 1oxb_B) ( 6258 1vi6_A) 0.5045 0.4282 2.8764 ( 1 6 15) 0 0.7336 0.5949 10 13 ( 4813 1oxb_B) ( 6283 1vjg_A) 0.8711 0.7379 5.6252 ( 1 15 36) 0 0.8949 0.7479 10 12 ( 4813 1oxb_B) ( 6496 2nac_A) 0.8994 0.6922 3.9670 ( 0 14 36) 0 0.8994 0.6922 10 13 ( 4813 1oxb_B) ( 6624 5nul ) 0.7340 0.7340 4.1666 ( 2 17 36) 0 0.8781 0.8781 10 10 ( 4813 1oxb_B) ( 6640 7req_A) 0.9998 0.8333 2.6522 ( 0 24 45) 0 0.9998 0.8333 10 12 ( 4813 1oxb_B) ( 6642 7req_B) 0.8996 0.6922 3.6218 ( 0 17 36) 0 0.9856 0.7653 10 13 -------------------------------------------------------------------------------------------------------------------------