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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 4905 1p5f_A) ( 6 1a04_A) 0.6854 0.8254 4.6899 ( 2 22 45) 0 0.7240 0.8392 14 11
( 4905 1p5f_A) ( 26 1a2o_A) 0.6314 0.7337 4.9831 ( 3 24 45) 0 0.6384 0.8770 14 10
( 4905 1p5f_A) ( 90 1a9x_B) 0.7847 0.6108 3.4516 ( 1 31 55) 0 0.7847 0.6108 14 18
( 4905 1p5f_A) ( 256 1b00_A) 0.6083 0.6881 3.7677 ( 3 22 45) 0 0.6083 0.7637 14 10
( 4905 1p5f_A) ( 266 1b1c_A) 0.6802 0.8125 4.7122 ( 2 21 45) 0 0.6802 0.8125 14 11
( 4905 1p5f_A) ( 428 1bmt_A) 0.7127 0.9037 4.2788 ( 1 24 45) 0 0.7127 0.9037 14 11
( 4905 1p5f_A) ( 477 1bvy_F) 0.6129 0.8182 4.0508 ( 2 19 36) 0 0.6129 0.8878 14 9
( 4905 1p5f_A) ( 523 1c4k_A) 0.5639 0.9015 6.7699 ( 1 12 28) 0 0.5639 0.9015 14 8
( 4905 1p5f_A) ( 562 1ccw_A) 0.6220 0.8076 3.9116 ( 2 21 36) 0 0.6220 0.8076 14 10
( 4905 1p5f_A) ( 745 1d4a_A) 0.6568 0.6240 4.6702 ( 3 27 45) 0 0.6568 0.6240 14 15
( 4905 1p5f_A) ( 786 1dbw_A) 0.6800 0.8593 5.2685 ( 2 21 45) 0 0.7115 0.9854 14 10
( 4905 1p5f_A) ( 793 1dcf_A) 0.6313 0.7335 5.3287 ( 3 24 45) 0 0.6313 0.7335 14 10
( 4905 1p5f_A) ( 971 1dxy ) 0.5035 0.5528 4.8752 ( 3 17 36) 0 0.5035 0.6662 14 9
( 4905 1p5f_A) ( 980 1dz3_A) 0.6066 0.7563 4.8314 ( 2 18 36) 0 0.6425 0.8979 14 10
( 4905 1p5f_A) ( 1042 1e5d_A) 0.7094 0.9751 5.1720 ( 1 18 45) 0 0.7094 0.9751 14 10
( 4905 1p5f_A) ( 1177 1eiw_A) 0.6177 0.8396 5.3566 ( 2 20 36) 0 0.6177 0.8867 14 9
( 4905 1p5f_A) ( 1252 1es9_A) 0.3571 0.4166 6.8027 ( 0 4 10) 0 0.5566 0.5831 14 12
( 4905 1p5f_A) ( 1253 1esc ) 0.6390 0.5280 6.1028 ( 1 17 36) 0 0.6390 0.5280 14 17
( 4905 1p5f_A) ( 1266 1euc_B) 0.5213 0.5398 4.3484 ( 3 17 45) 0 0.7607 0.8659 14 12
( 4905 1p5f_A) ( 1379 1f2v_A) 0.4201 0.3706 5.0066 ( 1 8 15) 0 0.8445 0.7434 14 16
( 4905 1p5f_A) ( 1397 1f4p_A) 0.6385 0.9634 4.8096 ( 1 16 36) 0 0.6385 0.9634 14 9
( 4905 1p5f_A) ( 1443 1f8y_A) 0.4389 0.4550 5.4930 ( 3 14 36) 0 0.5988 0.7004 14 11
( 4905 1p5f_A) ( 1516 1fjg_B) 0.5000 0.5833 3.5395 ( 0 5 21) 0 0.5501 0.6238 14 12
( 4905 1p5f_A) ( 1547 1flc_A) 0.4719 0.3801 4.0149 ( 1 7 21) 0 0.5988 0.4860 14 18
( 4905 1p5f_A) ( 1659 1fye_A) 0.4250 0.3323 4.5699 ( 1 10 15) 0 0.8546 0.6983 14 18
( 4905 1p5f_A) ( 1662 1fyx_A) 0.5501 0.6241 4.2957 ( 3 20 36) 0 0.5620 0.6631 14 10
( 4905 1p5f_A) ( 1700 1g2i_A) 0.8338 0.8338 1.6857 ( 3 44 66) 0 0.8338 0.8338 14 14
( 4905 1p5f_A) ( 1803 1gdh_A) 0.5714 0.7998 3.5987 ( 0 11 28) 0 0.6327 0.8509 14 10
( 4905 1p5f_A) ( 1901 1gpm_A) 0.7856 0.6875 2.7431 ( 0 34 55) 0 0.7856 0.6875 14 16
( 4905 1p5f_A) ( 2027 1h05_A) 0.6664 0.7806 3.1595 ( 2 19 45) 0 0.6664 0.8047 14 11
( 4905 1p5f_A) ( 2427 1i7q_B) 0.7363 0.5956 4.3312 ( 3 32 55) 0 0.7363 0.5956 14 18
( 4905 1p5f_A) ( 2470 1iex_A) 0.5620 0.6078 3.8104 ( 2 14 36) 0 0.7111 0.8265 14 12
( 4905 1p5f_A) ( 2714 1j2y_A) 0.6206 0.6919 4.2839 ( 3 23 45) 0 0.6206 0.7330 14 11
( 4905 1p5f_A) ( 2729 1j4a_A) 0.3571 0.5000 3.7280 ( 0 4 10) 0 0.4285 0.5999 14 10
( 4905 1p5f_A) ( 2809 1jbe_A) 0.4542 0.4691 4.9648 ( 4 19 45) 0 0.6425 0.8979 14 10
( 4905 1p5f_A) ( 3034 1jrl_A) 0.5641 0.7638 5.6077 ( 1 12 28) 0 0.5641 0.7638 14 10
( 4905 1p5f_A) ( 3073 1jvn_A) 0.6932 0.5541 3.0795 ( 4 35 55) 0 0.6932 0.5541 14 19
( 4905 1p5f_A) ( 3189 1k66_A) 0.7640 0.9346 5.0104 ( 2 27 55) 0 0.7640 0.9346 14 11
( 4905 1p5f_A) ( 3190 1k68_A) 0.4338 0.4455 3.5738 ( 4 18 45) 0 0.6662 0.8178 14 10
( 4905 1p5f_A) ( 3199 1k7c_A) 0.6372 0.5959 5.5951 ( 1 15 36) 0 0.6372 0.5959 14 15
( 4905 1p5f_A) ( 3234 1k9v_F) 0.7143 0.5555 2.6126 ( 0 29 45) 0 0.7143 0.5823 14 18
( 4905 1p5f_A) ( 3238 1ka9_H) 0.5799 0.5530 3.7905 ( 6 38 55) 0 0.7525 0.6697 14 16
( 4905 1p5f_A) ( 3295 1kgs_A) 0.6851 0.8761 5.5355 ( 2 22 45) 0 0.6851 0.8990 14 10
( 4905 1p5f_A) ( 3412 1krw_A) 0.5770 0.6796 4.1117 ( 2 15 36) 0 0.6380 0.8753 14 10
( 4905 1p5f_A) ( 3462 1kwg_A) 0.7130 0.6243 3.2823 ( 1 25 45) 0 0.7691 0.6788 14 16
( 4905 1p5f_A) ( 3560 1l7d_A) 0.4286 0.3529 3.2508 ( 0 5 15) 0 0.6427 0.5293 14 17
( 4905 1p5f_A) ( 3581 1l9x_A) 0.7755 0.5133 4.5148 ( 4 41 66) 0 0.7755 0.5133 14 23
( 4905 1p5f_A) ( 3632 1li4_A) 0.5000 0.3889 4.0930 ( 0 13 21) 0 0.7837 0.6105 14 18
( 4905 1p5f_A) ( 3801 1m2e_A) 0.4285 0.6657 6.6773 ( 0 8 15) 0 0.5713 0.8876 14 9
( 4905 1p5f_A) ( 3896 1mb3_A) 0.4738 0.4925 3.7276 ( 4 20 45) 0 0.6896 0.8920 14 10
( 4905 1p5f_A) ( 4066 1mx3_A) 0.5714 0.7272 3.2487 ( 0 11 28) 0 0.6422 0.8159 14 11
( 4905 1p5f_A) ( 4130 1n57_A) 0.8239 0.6566 2.7958 ( 3 40 66) 0 0.8496 0.6645 14 18
( 4905 1p5f_A) ( 4185 1nat ) 0.4984 0.5230 3.6389 ( 3 16 45) 0 0.5422 0.6999 14 10
( 4905 1p5f_A) ( 4323 1nni_1) 0.7842 0.9950 4.9770 ( 1 31 55) 0 0.7842 0.9950 14 11
( 4905 1p5f_A) ( 4433 1ny5_A) 0.4982 0.5228 6.5926 ( 3 16 45) 0 0.7001 0.9328 14 10
( 4905 1p5f_A) ( 4474 1o1y_A) 0.6734 0.5165 6.2182 ( 2 20 45) 0 0.6734 0.5165 14 19
( 4905 1p5f_A) ( 4590 1obo_A) 0.6898 0.8925 4.1644 ( 2 23 45) 0 0.6898 0.8925 14 10
( 4905 1p5f_A) ( 4669 1oi7_A) 0.4148 0.4349 3.6901 ( 2 9 28) 0 0.7136 0.9069 14 11
( 4905 1p5f_A) ( 4787 1ou0_A) 0.3571 0.2941 4.3933 ( 0 3 10) 0 0.8204 0.7169 14 17
( 4905 1p5f_A) ( 4813 1oxb_B) 0.4284 0.5991 7.3793 ( 0 9 15) 0 0.6494 0.8723 14 10
( 4905 1p5f_A) ( 4871 1p2f_A) 0.4924 0.5154 4.5350 ( 4 21 45) 0 0.7082 0.9689 14 10
( 4905 1p5f_A) ( 4905 1p5f_A) 1.0000 1.0000 0.0000 ( 0 64 91) 0 1.0000 1.0000 14 14
( 4905 1p5f_A) ( 4916 1p6u_A) 0.5500 0.6240 5.1150 ( 3 20 36) 0 0.6408 0.8891 14 10
( 4905 1p5f_A) ( 4926 1p80_A) 0.7064 0.7580 2.3456 ( 2 31 45) 0 0.7064 0.7580 14 13
( 4905 1p5f_A) ( 5096 1psd_A) 0.5713 0.8875 5.0872 ( 0 5 28) 0 0.5714 0.8882 14 9
( 4905 1p5f_A) ( 5234 1q7r_A) 0.6843 0.5989 4.6471 ( 5 39 66) 0 0.6843 0.5989 14 18
( 4905 1p5f_A) ( 5289 1qcz_A) 0.4625 0.4887 3.7631 ( 3 15 36) 0 0.6425 0.8983 14 10
( 4905 1p5f_A) ( 5297 1qdl_B) 0.7848 0.6467 2.9342 ( 1 31 55) 0 0.7848 0.6467 14 17
( 4905 1p5f_A) ( 5364 1qkk_A) 0.4541 0.4690 6.8193 ( 4 19 45) 0 0.5564 0.7313 14 10
( 4905 1p5f_A) ( 5397 1qo0_D) 0.5065 0.5507 10.8521 ( 2 13 28) 0 0.5065 0.5507 14 12
( 4905 1p5f_A) ( 5470 1qvz_A) 0.8566 0.7497 3.5397 ( 1 44 66) 0 0.8566 0.7497 14 16
( 4905 1p5f_A) ( 5673 1rli_A) 0.7849 0.9149 5.1825 ( 0 32 55) 0 0.7849 0.9149 14 12
( 4905 1p5f_A) ( 5752 1s2d_A) 0.4710 0.5314 4.8542 ( 2 11 28) 0 0.4947 0.7351 14 9
( 4905 1p5f_A) ( 5785 1say_A) 0.6386 0.4728 3.9569 ( 1 16 36) 0 0.7167 0.5905 14 19
( 4905 1p5f_A) ( 5842 1sqs_A) 0.7119 0.7119 4.8090 ( 1 22 45) 0 0.7119 0.7119 14 14
( 4905 1p5f_A) ( 5920 1tmy ) 0.4924 0.5155 3.6269 ( 4 21 45) 0 0.5613 0.6473 14 10
( 4905 1p5f_A) ( 6242 1vhq_A) 0.8567 0.8567 2.1362 ( 1 42 66) 0 0.8567 0.8567 14 14
( 4905 1p5f_A) ( 6258 1vi6_A) 0.4045 0.4282 3.9259 ( 1 6 15) 0 0.5988 0.6318 14 13
( 4905 1p5f_A) ( 6283 1vjg_A) 0.4285 0.4999 4.8605 ( 0 7 15) 0 0.6062 0.6655 14 12
( 4905 1p5f_A) ( 6496 2nac_A) 0.3571 0.3846 3.9109 ( 0 5 10) 0 0.7085 0.7608 14 13
( 4905 1p5f_A) ( 6624 5nul ) 0.6896 0.8919 4.8494 ( 2 23 45) 0 0.6896 0.8993 14 10
( 4905 1p5f_A) ( 6640 7req_A) 0.3571 0.4167 2.9819 ( 0 4 10) 0 0.7111 0.8264 14 12
( 4905 1p5f_A) ( 6642 7req_B) 0.5713 0.6152 4.8737 ( 0 13 28) 0 0.6489 0.6809 14 13
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