------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4926 1p80_A) ( 6 1a04_A) 0.6153 0.7271 3.7509 ( 0 16 28) 0 0.6571 0.7453 13 11 ( 4926 1p80_A) ( 26 1a2o_A) 0.6505 0.7760 4.3551 ( 2 19 36) 0 0.6505 0.7760 13 10 ( 4926 1p80_A) ( 90 1a9x_B) 0.6909 0.4997 1.8890 ( 1 23 36) 0 0.6909 0.4997 13 18 ( 4926 1p80_A) ( 256 1b00_A) 0.4708 0.4887 3.3894 ( 4 20 36) 0 0.6009 0.7514 13 10 ( 4926 1p80_A) ( 266 1b1c_A) 0.6421 0.7180 4.5532 ( 2 18 36) 0 0.6421 0.7269 13 11 ( 4926 1p80_A) ( 428 1bmt_A) 0.4708 0.4839 4.3951 ( 4 20 36) 0 0.6150 0.7264 13 11 ( 4926 1p80_A) ( 477 1bvy_F) 0.6900 0.9857 4.7638 ( 1 21 36) 0 0.6900 0.9857 13 9 ( 4926 1p80_A) ( 523 1c4k_A) 0.5383 0.8732 5.5512 ( 0 8 21) 0 0.5383 0.8734 13 8 ( 4926 1p80_A) ( 562 1ccw_A) 0.4564 0.5819 3.6959 ( 1 10 15) 0 0.5331 0.6810 13 10 ( 4926 1p80_A) ( 745 1d4a_A) 0.4615 0.4000 4.0348 ( 0 8 15) 0 0.6315 0.5673 13 15 ( 4926 1p80_A) ( 786 1dbw_A) 0.6874 0.8822 4.6189 ( 1 17 36) 0 0.6874 0.8822 13 10 ( 4926 1p80_A) ( 793 1dcf_A) 0.3846 0.4998 6.3882 ( 0 6 10) 0 0.5702 0.6800 13 10 ( 4926 1p80_A) ( 971 1dxy ) 0.4345 0.4582 4.8446 ( 3 14 28) 0 0.6153 0.8881 13 9 ( 4926 1p80_A) ( 980 1dz3_A) 0.4567 0.4825 4.2627 ( 3 15 28) 0 0.6152 0.7994 13 10 ( 4926 1p80_A) ( 1042 1e5d_A) 0.6919 0.8987 4.9523 ( 0 16 36) 0 0.6919 0.8987 13 10 ( 4926 1p80_A) ( 1177 1eiw_A) 0.6673 0.8771 4.5272 ( 2 22 36) 0 0.6673 0.8771 13 9 ( 4926 1p80_A) ( 1252 1es9_A) 0.3846 0.4166 4.3650 ( 0 7 10) 0 0.5944 0.6362 13 12 ( 4926 1p80_A) ( 1253 1esc ) 0.5384 0.4118 4.0955 ( 0 11 21) 0 0.5384 0.4118 13 17 ( 4926 1p80_A) ( 1266 1euc_B) 0.6039 0.6306 4.0522 ( 2 15 36) 0 0.7028 0.7410 13 12 ( 4926 1p80_A) ( 1379 1f2v_A) 0.6884 0.5611 4.2519 ( 1 18 36) 0 0.7650 0.6235 13 16 ( 4926 1p80_A) ( 1397 1f4p_A) 0.6919 0.9977 4.9680 ( 0 17 36) 0 0.6919 0.9977 13 9 ( 4926 1p80_A) ( 1443 1f8y_A) 0.4995 0.5587 4.0439 ( 1 7 21) 0 0.6125 0.7207 13 11 ( 4926 1p80_A) ( 1516 1fjg_B) 0.5384 0.5832 4.4719 ( 0 5 21) 0 0.5600 0.5899 13 12 ( 4926 1p80_A) ( 1547 1flc_A) 0.6050 0.4423 4.9577 ( 1 12 28) 0 0.6050 0.4423 13 18 ( 4926 1p80_A) ( 1659 1fye_A) 0.3699 0.2747 3.8076 ( 1 6 10) 0 0.6923 0.5202 13 18 ( 4926 1p80_A) ( 1662 1fyx_A) 0.3641 0.3688 5.3646 ( 7 26 36) 0 0.4948 0.5357 13 10 ( 4926 1p80_A) ( 1700 1g2i_A) 0.9188 0.8542 2.0853 ( 2 50 66) 0 0.9188 0.8542 13 14 ( 4926 1p80_A) ( 1803 1gdh_A) 0.3846 0.4999 4.5269 ( 0 4 10) 0 0.6152 0.7992 13 10 ( 4926 1p80_A) ( 1901 1gpm_A) 0.6769 0.5569 2.5647 ( 2 25 36) 0 0.6769 0.5569 13 16 ( 4926 1p80_A) ( 2027 1h05_A) 0.5165 0.5381 3.4609 ( 3 17 36) 0 0.6741 0.7786 13 11 ( 4926 1p80_A) ( 2427 1i7q_B) 0.6923 0.5000 2.9661 ( 0 24 36) 0 0.6923 0.5000 13 18 ( 4926 1p80_A) ( 2470 1iex_A) 0.3673 0.3693 4.7365 ( 4 15 36) 0 0.5383 0.5830 13 12 ( 4926 1p80_A) ( 2714 1j2y_A) 0.6125 0.7208 5.1752 ( 1 17 28) 0 0.6125 0.7208 13 11 ( 4926 1p80_A) ( 2729 1j4a_A) 0.3846 0.5000 4.1240 ( 0 5 10) 0 0.6153 0.7996 13 10 ( 4926 1p80_A) ( 2809 1jbe_A) 0.5108 0.5601 2.6921 ( 2 12 28) 0 0.5473 0.6235 13 10 ( 4926 1p80_A) ( 3034 1jrl_A) 0.5275 0.6627 6.0640 ( 1 10 21) 0 0.5275 0.6627 13 10 ( 4926 1p80_A) ( 3073 1jvn_A) 0.6036 0.4875 2.9264 ( 5 34 45) 0 0.6036 0.4875 13 19 ( 4926 1p80_A) ( 3189 1k66_A) 0.6193 0.6800 3.8821 ( 2 16 36) 0 0.7028 0.8042 13 11 ( 4926 1p80_A) ( 3190 1k68_A) 0.6922 0.8995 3.9064 ( 0 16 36) 0 0.6922 0.8995 13 10 ( 4926 1p80_A) ( 3199 1k7c_A) 0.5310 0.4629 3.5450 ( 1 11 21) 0 0.5310 0.4629 13 15 ( 4926 1p80_A) ( 3234 1k9v_F) 0.6743 0.4963 2.5804 ( 2 24 36) 0 0.6743 0.4963 13 18 ( 4926 1p80_A) ( 3238 1ka9_H) 0.6923 0.5625 2.8592 ( 0 25 36) 0 0.6923 0.5820 13 16 ( 4926 1p80_A) ( 3295 1kgs_A) 0.6050 0.7643 4.5968 ( 1 12 28) 0 0.6920 0.8990 13 10 ( 4926 1p80_A) ( 3412 1krw_A) 0.6874 0.8825 4.2363 ( 1 17 36) 0 0.6920 0.8987 13 10 ( 4926 1p80_A) ( 3462 1kwg_A) 0.6892 0.5614 2.8865 ( 1 19 36) 0 0.6892 0.5614 13 16 ( 4926 1p80_A) ( 3560 1l7d_A) 0.4615 0.3529 3.2608 ( 0 7 15) 0 0.6569 0.5193 13 17 ( 4926 1p80_A) ( 3581 1l9x_A) 0.6923 0.3913 2.6777 ( 0 25 36) 0 0.7683 0.4347 13 23 ( 4926 1p80_A) ( 3632 1li4_A) 0.5852 0.4719 4.7588 ( 3 21 36) 0 0.6108 0.4719 13 18 ( 4926 1p80_A) ( 3801 1m2e_A) 0.6152 0.8877 4.9215 ( 0 15 28) 0 0.6886 0.9779 13 9 ( 4926 1p80_A) ( 3896 1mb3_A) 0.6884 0.8859 4.0757 ( 1 18 36) 0 0.6884 0.8859 13 10 ( 4926 1p80_A) ( 4066 1mx3_A) 0.5384 0.6362 4.6638 ( 0 8 21) 0 0.6151 0.7266 13 11 ( 4926 1p80_A) ( 4130 1n57_A) 0.6911 0.4998 2.3608 ( 1 24 36) 0 0.7577 0.5532 13 18 ( 4926 1p80_A) ( 4185 1nat ) 0.6921 0.8992 4.3431 ( 0 14 36) 0 0.6921 0.8992 13 10 ( 4926 1p80_A) ( 4323 1nni_1) 0.6901 0.8131 4.1231 ( 1 21 36) 0 0.6901 0.8131 13 11 ( 4926 1p80_A) ( 4433 1ny5_A) 0.6911 0.8954 6.7461 ( 0 14 36) 0 0.6911 0.8954 13 10 ( 4926 1p80_A) ( 4474 1o1y_A) 0.6743 0.4708 2.6763 ( 2 24 36) 0 0.6743 0.4708 13 19 ( 4926 1p80_A) ( 4590 1obo_A) 0.6573 0.7930 4.0569 ( 2 20 36) 0 0.6573 0.7948 13 10 ( 4926 1p80_A) ( 4669 1oi7_A) 0.5310 0.5745 3.2532 ( 2 13 28) 0 0.6821 0.7954 13 11 ( 4926 1p80_A) ( 4787 1ou0_A) 0.4615 0.3529 4.2054 ( 0 5 15) 0 0.5139 0.4192 13 17 ( 4926 1p80_A) ( 4813 1oxb_B) 0.6097 0.7797 3.9014 ( 1 14 28) 0 0.6420 0.7797 13 10 ( 4926 1p80_A) ( 4871 1p2f_A) 0.6318 0.7339 4.6977 ( 2 17 36) 0 0.6822 0.8646 13 10 ( 4926 1p80_A) ( 4905 1p5f_A) 0.7580 0.7064 2.3456 ( 2 31 45) 0 0.7580 0.7064 13 14 ( 4926 1p80_A) ( 4916 1p6u_A) 0.6672 0.8195 5.1170 ( 2 22 36) 0 0.6672 0.8195 13 10 ( 4926 1p80_A) ( 4926 1p80_A) 1.0000 1.0000 0.0000 ( 0 61 78) 0 1.0000 1.0000 13 13 ( 4926 1p80_A) ( 5096 1psd_A) 0.3077 0.4444 3.9617 ( 0 1 6) 0 0.5383 0.7770 13 9 ( 4926 1p80_A) ( 5234 1q7r_A) 0.6490 0.5239 4.7361 ( 4 31 45) 0 0.6743 0.5239 13 18 ( 4926 1p80_A) ( 5289 1qcz_A) 0.4345 0.4540 3.2927 ( 3 14 28) 0 0.6316 0.7646 13 10 ( 4926 1p80_A) ( 5297 1qdl_B) 0.6903 0.5289 2.5406 ( 1 21 36) 0 0.6903 0.5289 13 17 ( 4926 1p80_A) ( 5364 1qkk_A) 0.6315 0.7333 5.8975 ( 2 17 36) 0 0.6315 0.7333 13 10 ( 4926 1p80_A) ( 5397 1qo0_D) 0.6487 0.6884 8.0993 ( 2 19 36) 0 0.6487 0.6884 13 12 ( 4926 1p80_A) ( 5470 1qvz_A) 0.7580 0.6209 2.2612 ( 2 31 45) 0 0.7580 0.6209 13 16 ( 4926 1p80_A) ( 5673 1rli_A) 0.7518 0.8079 5.4348 ( 2 28 45) 0 0.7518 0.8079 13 12 ( 4926 1p80_A) ( 5752 1s2d_A) 0.5276 0.7191 4.7863 ( 1 10 21) 0 0.5602 0.7191 13 9 ( 4926 1p80_A) ( 5785 1say_A) 0.5474 0.4083 3.8607 ( 2 14 28) 0 0.6621 0.4687 13 19 ( 4926 1p80_A) ( 5842 1sqs_A) 0.6886 0.6403 5.8522 ( 1 19 36) 0 0.7113 0.6836 13 14 ( 4926 1p80_A) ( 5920 1tmy ) 0.6884 0.8858 4.1915 ( 1 18 36) 0 0.6884 0.8858 13 10 ( 4926 1p80_A) ( 6242 1vhq_A) 0.7686 0.7139 2.3597 ( 1 33 45) 0 0.7686 0.7139 13 14 ( 4926 1p80_A) ( 6258 1vi6_A) 0.6152 0.6152 4.4868 ( 0 11 28) 0 0.6152 0.6152 13 13 ( 4926 1p80_A) ( 6283 1vjg_A) 0.6150 0.6662 5.6652 ( 0 13 28) 0 0.6150 0.6662 13 12 ( 4926 1p80_A) ( 6496 2nac_A) 0.4318 0.4318 5.6926 ( 4 18 36) 0 0.5948 0.5948 13 13 ( 4926 1p80_A) ( 6624 5nul ) 0.6919 0.8985 5.1219 ( 0 17 36) 0 0.6919 0.8985 13 10 ( 4926 1p80_A) ( 6640 7req_A) 0.4707 0.4779 5.4924 ( 4 20 36) 0 0.5702 0.6033 13 12 ( 4926 1p80_A) ( 6642 7req_B) 0.4615 0.4615 3.8503 ( 0 6 15) 0 0.5708 0.5708 13 13 -------------------------------------------------------------------------------------------------------------------------