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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 5234 1q7r_A) ( 6 1a04_A) 0.4999 0.8175 4.7038 ( 0 16 36) 0 0.4999 0.8175 18 11
( 5234 1q7r_A) ( 26 1a2o_A) 0.5000 0.8993 4.1812 ( 0 19 36) 0 0.5000 0.8993 18 10
( 5234 1q7r_A) ( 90 1a9x_B) 0.8878 0.8878 3.9712 ( 2 80 120) 0 0.8878 0.8878 18 18
( 5234 1q7r_A) ( 256 1b00_A) 0.5482 0.8926 3.9533 ( 2 23 45) 0 0.5482 0.8974 18 10
( 5234 1q7r_A) ( 266 1b1c_A) 0.4987 0.8038 5.2106 ( 1 16 36) 0 0.5544 0.8956 18 11
( 5234 1q7r_A) ( 428 1bmt_A) 0.5509 0.8608 4.6488 ( 2 26 45) 0 0.5509 0.8608 18 11
( 5234 1q7r_A) ( 477 1bvy_F) 0.4936 0.8577 6.3760 ( 2 21 36) 0 0.4936 0.8879 18 9
( 5234 1q7r_A) ( 523 1c4k_A) 0.3889 0.8741 4.5862 ( 0 10 21) 0 0.4415 0.8774 18 8
( 5234 1q7r_A) ( 562 1ccw_A) 0.4860 0.7340 4.2934 ( 2 17 36) 0 0.4993 0.8866 18 10
( 5234 1q7r_A) ( 745 1d4a_A) 0.4907 0.5779 6.1957 ( 2 19 36) 0 0.5108 0.5978 18 15
( 5234 1q7r_A) ( 786 1dbw_A) 0.5000 0.8993 4.2184 ( 0 19 36) 0 0.5225 0.8993 18 10
( 5234 1q7r_A) ( 793 1dcf_A) 0.4860 0.7340 4.2547 ( 2 17 36) 0 0.4998 0.8971 18 10
( 5234 1q7r_A) ( 971 1dxy ) 0.4317 0.6769 3.1076 ( 2 15 28) 0 0.4444 0.8866 18 9
( 5234 1q7r_A) ( 980 1dz3_A) 0.4444 0.7996 4.1260 ( 0 15 28) 0 0.4444 0.7996 18 10
( 5234 1q7r_A) ( 1042 1e5d_A) 0.5553 0.9957 5.8113 ( 0 20 45) 0 0.5553 0.9957 18 10
( 5234 1q7r_A) ( 1177 1eiw_A) 0.4444 0.8881 4.3883 ( 0 18 28) 0 0.4667 0.8881 18 9
( 5234 1q7r_A) ( 1252 1es9_A) 0.4999 0.7492 5.4507 ( 0 18 36) 0 0.5506 0.7991 18 12
( 5234 1q7r_A) ( 1253 1esc ) 0.4422 0.4676 7.6638 ( 1 12 28) 0 0.4933 0.5205 18 17
( 5234 1q7r_A) ( 1266 1euc_B) 0.3333 0.4999 4.8568 ( 0 2 15) 0 0.6019 0.8559 18 12
( 5234 1q7r_A) ( 1379 1f2v_A) 0.3318 0.3722 4.5289 ( 1 9 15) 0 0.5613 0.6220 18 16
( 5234 1q7r_A) ( 1397 1f4p_A) 0.4998 0.9927 6.6487 ( 0 16 36) 0 0.4998 0.9927 18 9
( 5234 1q7r_A) ( 1443 1f8y_A) 0.4437 0.7193 4.9658 ( 1 16 28) 0 0.4444 0.7271 18 11
( 5234 1q7r_A) ( 1516 1fjg_B) 0.2222 0.3333 3.6751 ( 0 1 6) 0 0.3867 0.5674 18 12
( 5234 1q7r_A) ( 1547 1flc_A) 0.2222 0.2222 5.1221 ( 0 1 6) 0 0.4778 0.4778 18 18
( 5234 1q7r_A) ( 1659 1fye_A) 0.3333 0.3333 4.8742 ( 0 9 15) 0 0.7354 0.7354 18 18
( 5234 1q7r_A) ( 1662 1fyx_A) 0.4209 0.5829 4.7567 ( 3 19 28) 0 0.4825 0.7081 18 10
( 5234 1q7r_A) ( 1700 1g2i_A) 0.5393 0.6632 4.9044 ( 3 28 45) 0 0.5393 0.6632 18 14
( 5234 1q7r_A) ( 1803 1gdh_A) 0.4779 0.6792 5.6674 ( 2 15 36) 0 0.4978 0.8625 18 10
( 5234 1q7r_A) ( 1901 1gpm_A) 0.8879 0.9982 4.1088 ( 2 85 120) 0 0.8879 0.9982 18 16
( 5234 1q7r_A) ( 2027 1h05_A) 0.4948 0.7650 4.3021 ( 1 11 36) 0 0.5323 0.8160 18 11
( 5234 1q7r_A) ( 2427 1i7q_B) 0.8801 0.8801 4.3050 ( 4 81 120) 0 0.8801 0.8801 18 18
( 5234 1q7r_A) ( 2470 1iex_A) 0.2778 0.4166 4.7429 ( 0 4 10) 0 0.5553 0.8318 18 12
( 5234 1q7r_A) ( 2714 1j2y_A) 0.4999 0.8171 5.2331 ( 0 15 36) 0 0.4999 0.8171 18 11
( 5234 1q7r_A) ( 2729 1j4a_A) 0.4998 0.8970 6.0348 ( 0 19 36) 0 0.4998 0.8970 18 10
( 5234 1q7r_A) ( 2809 1jbe_A) 0.4988 0.8785 3.3023 ( 1 16 36) 0 0.4999 0.8986 18 10
( 5234 1q7r_A) ( 3034 1jrl_A) 0.4422 0.7618 7.4065 ( 1 12 28) 0 0.4422 0.7618 18 10
( 5234 1q7r_A) ( 3073 1jvn_A) 0.8629 0.8220 4.1109 ( 5 75 120) 0 0.8629 0.8220 18 19
( 5234 1q7r_A) ( 3189 1k66_A) 0.5501 0.8537 4.9587 ( 2 25 45) 0 0.5501 0.8537 18 11
( 5234 1q7r_A) ( 3190 1k68_A) 0.4979 0.8643 4.7093 ( 1 14 36) 0 0.4999 0.8989 18 10
( 5234 1q7r_A) ( 3199 1k7c_A) 0.2778 0.3333 7.9889 ( 0 6 10) 0 0.5000 0.5999 18 15
( 5234 1q7r_A) ( 3234 1k9v_F) 0.9289 0.9289 3.6668 ( 5 93 136) 0 0.9289 0.9289 18 18
( 5234 1q7r_A) ( 3238 1ka9_H) 0.7437 0.7960 4.1147 ( 7 67 105) 0 0.7437 0.7960 18 16
( 5234 1q7r_A) ( 3295 1kgs_A) 0.4531 0.5735 3.3568 ( 2 12 36) 0 0.4531 0.7997 18 10
( 5234 1q7r_A) ( 3412 1krw_A) 0.4962 0.8393 4.8792 ( 1 12 36) 0 0.4999 0.8989 18 10
( 5234 1q7r_A) ( 3462 1kwg_A) 0.2849 0.2856 5.7437 ( 15 43 78) 0 0.6447 0.6770 18 16
( 5234 1q7r_A) ( 3560 1l7d_A) 0.2778 0.2941 3.6583 ( 0 4 10) 0 0.5550 0.5874 18 17
( 5234 1q7r_A) ( 3581 1l9x_A) 0.7736 0.6075 5.1590 ( 3 64 91) 0 0.7736 0.6075 18 23
( 5234 1q7r_A) ( 3632 1li4_A) 0.3326 0.3326 5.2855 ( 1 11 15) 0 0.6043 0.6043 18 18
( 5234 1q7r_A) ( 3801 1m2e_A) 0.4860 0.7651 3.6251 ( 2 17 36) 0 0.4992 0.9749 18 9
( 5234 1q7r_A) ( 3896 1mb3_A) 0.4994 0.8881 4.5078 ( 1 19 36) 0 0.4999 0.8976 18 10
( 5234 1q7r_A) ( 4066 1mx3_A) 0.4066 0.5123 5.7154 ( 2 11 28) 0 0.4970 0.7863 18 11
( 5234 1q7r_A) ( 4130 1n57_A) 0.6062 0.6062 4.6524 ( 2 29 55) 0 0.6062 0.6062 18 18
( 5234 1q7r_A) ( 4185 1nat ) 0.5000 0.8992 4.3525 ( 0 13 36) 0 0.5000 0.8992 18 10
( 5234 1q7r_A) ( 4323 1nni_1) 0.5252 0.6155 4.7734 ( 5 32 55) 0 0.5252 0.7265 18 11
( 5234 1q7r_A) ( 4433 1ny5_A) 0.5000 0.8993 4.1370 ( 0 12 36) 0 0.5000 0.8993 18 10
( 5234 1q7r_A) ( 4474 1o1y_A) 0.8084 0.7702 4.7124 ( 5 70 105) 0 0.8084 0.7702 18 19
( 5234 1q7r_A) ( 4590 1obo_A) 0.4992 0.6236 4.9943 ( 4 26 45) 0 0.4993 0.8872 18 10
( 5234 1q7r_A) ( 4669 1oi7_A) 0.4999 0.8174 4.8713 ( 0 16 36) 0 0.5031 0.8174 18 11
( 5234 1q7r_A) ( 4787 1ou0_A) 0.2778 0.2941 4.0849 ( 0 5 10) 0 0.5548 0.5872 18 17
( 5234 1q7r_A) ( 4813 1oxb_B) 0.4999 0.8989 4.7369 ( 0 17 36) 0 0.5465 0.8989 18 10
( 5234 1q7r_A) ( 4871 1p2f_A) 0.5000 0.8992 4.3239 ( 0 12 36) 0 0.5000 0.8992 18 10
( 5234 1q7r_A) ( 4905 1p5f_A) 0.5989 0.6843 4.6471 ( 5 39 66) 0 0.5989 0.6843 18 14
( 5234 1q7r_A) ( 4916 1p6u_A) 0.5491 0.9036 5.8266 ( 2 24 45) 0 0.5491 0.9036 18 10
( 5234 1q7r_A) ( 4926 1p80_A) 0.5239 0.6490 4.7361 ( 4 31 45) 0 0.5239 0.6743 18 13
( 5234 1q7r_A) ( 5096 1psd_A) 0.3889 0.7768 5.4929 ( 0 6 21) 0 0.4444 0.8865 18 9
( 5234 1q7r_A) ( 5234 1q7r_A) 1.0000 1.0000 0.0000 ( 0 111 153) 0 1.0000 1.0000 18 18
( 5234 1q7r_A) ( 5289 1qcz_A) 0.4999 0.8987 4.8825 ( 0 18 36) 0 0.4999 0.8987 18 10
( 5234 1q7r_A) ( 5297 1qdl_B) 0.8875 0.9393 4.4621 ( 2 80 120) 0 0.8875 0.9393 18 17
( 5234 1q7r_A) ( 5364 1qkk_A) 0.5542 0.9761 4.4966 ( 1 18 45) 0 0.5542 0.9761 18 10
( 5234 1q7r_A) ( 5397 1qo0_D) 0.4602 0.5704 8.3076 ( 3 19 36) 0 0.5279 0.7437 18 12
( 5234 1q7r_A) ( 5470 1qvz_A) 0.5521 0.6189 4.0184 ( 2 28 45) 0 0.5521 0.6189 18 16
( 5234 1q7r_A) ( 5673 1rli_A) 0.5677 0.7127 5.9213 ( 4 32 55) 0 0.5677 0.7436 18 12
( 5234 1q7r_A) ( 5752 1s2d_A) 0.3689 0.4273 6.5759 ( 3 13 28) 0 0.4066 0.6958 18 9
( 5234 1q7r_A) ( 5785 1say_A) 0.2778 0.2632 3.1979 ( 0 2 10) 0 0.5225 0.5004 18 19
( 5234 1q7r_A) ( 5842 1sqs_A) 0.4860 0.5987 5.5320 ( 2 17 36) 0 0.4991 0.6397 18 14
( 5234 1q7r_A) ( 5920 1tmy ) 0.5000 0.8991 4.4543 ( 0 19 36) 0 0.5000 0.8991 18 10
( 5234 1q7r_A) ( 6242 1vhq_A) 0.5553 0.7133 4.4664 ( 1 28 45) 0 0.5553 0.7133 18 14
( 5234 1q7r_A) ( 6258 1vi6_A) 0.2778 0.3846 3.3669 ( 0 5 10) 0 0.4415 0.6010 18 13
( 5234 1q7r_A) ( 6283 1vjg_A) 0.4443 0.6659 6.2393 ( 0 8 28) 0 0.4444 0.6661 18 12
( 5234 1q7r_A) ( 6496 2nac_A) 0.4444 0.6150 5.7559 ( 0 12 28) 0 0.5448 0.7207 18 13
( 5234 1q7r_A) ( 6624 5nul ) 0.5448 0.8573 6.5864 ( 2 21 45) 0 0.5448 0.8934 18 10
( 5234 1q7r_A) ( 6640 7req_A) 0.4999 0.7496 4.6354 ( 0 20 36) 0 0.5501 0.7958 18 12
( 5234 1q7r_A) ( 6642 7req_B) 0.5370 0.6911 4.0858 ( 3 27 45) 0 0.5493 0.7394 18 13
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