------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5364 1qkk_A) ( 6 1a04_A) 0.9943 0.9055 6.2385 ( 0 21 45) 0 0.9943 0.9055 10 11 ( 5364 1qkk_A) ( 26 1a2o_A) 0.9966 0.9966 5.4582 ( 0 22 45) 0 0.9966 0.9966 10 10 ( 5364 1qkk_A) ( 90 1a9x_B) 0.8981 0.4999 5.3765 ( 0 14 36) 0 0.8981 0.4999 10 18 ( 5364 1qkk_A) ( 256 1b00_A) 0.9976 0.9976 5.0191 ( 0 21 45) 0 0.9976 0.9976 10 10 ( 5364 1qkk_A) ( 266 1b1c_A) 0.8957 0.8155 6.6161 ( 0 12 36) 0 0.8963 0.8159 10 11 ( 5364 1qkk_A) ( 428 1bmt_A) 0.9937 0.9051 6.4122 ( 0 20 45) 0 0.9937 0.9051 10 11 ( 5364 1qkk_A) ( 477 1bvy_F) 0.7975 0.8846 6.7210 ( 0 13 28) 0 0.7995 0.8880 10 9 ( 5364 1qkk_A) ( 523 1c4k_A) 0.6996 0.8737 5.0828 ( 0 10 21) 0 0.6996 0.8737 10 8 ( 5364 1qkk_A) ( 562 1ccw_A) 0.8971 0.8971 6.0036 ( 0 14 36) 0 0.8971 0.8971 10 10 ( 5364 1qkk_A) ( 745 1d4a_A) 0.8302 0.6345 9.1205 ( 2 20 45) 0 0.9771 0.6635 10 15 ( 5364 1qkk_A) ( 786 1dbw_A) 0.9853 0.9853 5.0244 ( 1 21 45) 0 0.9853 0.9853 10 10 ( 5364 1qkk_A) ( 793 1dcf_A) 0.9956 0.9956 5.8531 ( 0 22 45) 0 0.9956 0.9956 10 10 ( 5364 1qkk_A) ( 971 1dxy ) 0.8996 0.9994 3.5834 ( 0 11 36) 0 0.8996 0.9994 10 9 ( 5364 1qkk_A) ( 980 1dz3_A) 0.9000 0.9000 1.9379 ( 0 17 36) 0 0.9000 0.9000 10 10 ( 5364 1qkk_A) ( 1042 1e5d_A) 0.7640 0.7640 6.0318 ( 2 17 45) 0 0.9642 0.9642 10 10 ( 5364 1qkk_A) ( 1177 1eiw_A) 0.7332 0.7640 6.0079 ( 2 17 36) 0 0.8791 0.9656 10 9 ( 5364 1qkk_A) ( 1252 1es9_A) 0.9707 0.8211 7.5443 ( 1 19 45) 0 0.9848 0.8271 10 12 ( 5364 1qkk_A) ( 1253 1esc ) 0.8820 0.5281 9.5806 ( 0 17 36) 0 0.8820 0.5281 10 17 ( 5364 1qkk_A) ( 1266 1euc_B) 0.9936 0.8307 6.4274 ( 0 17 45) 0 0.9936 0.8307 10 12 ( 5364 1qkk_A) ( 1379 1f2v_A) 0.9560 0.6204 7.3498 ( 1 16 45) 0 0.9560 0.6204 10 16 ( 5364 1qkk_A) ( 1397 1f4p_A) 0.7318 0.7623 7.4255 ( 2 17 36) 0 0.8687 0.9492 10 9 ( 5364 1qkk_A) ( 1443 1f8y_A) 0.4000 0.3636 3.7862 ( 0 1 6) 0 0.6977 0.6369 10 11 ( 5364 1qkk_A) ( 1516 1fjg_B) 0.4995 0.4165 8.0641 ( 0 1 10) 0 0.4995 0.4170 10 12 ( 5364 1qkk_A) ( 1547 1flc_A) 0.7938 0.4441 8.4403 ( 0 9 28) 0 0.7938 0.4441 10 18 ( 5364 1qkk_A) ( 1659 1fye_A) 0.5000 0.2778 2.5081 ( 0 4 10) 0 0.9610 0.5533 10 18 ( 5364 1qkk_A) ( 1662 1fyx_A) 0.7497 0.7497 7.2194 ( 1 11 28) 0 0.7600 0.7600 10 10 ( 5364 1qkk_A) ( 1700 1g2i_A) 0.5596 0.4915 7.1777 ( 2 12 28) 0 0.7957 0.5781 10 14 ( 5364 1qkk_A) ( 1803 1gdh_A) 0.9174 0.9174 7.9715 ( 1 13 45) 0 0.9174 0.9174 10 10 ( 5364 1qkk_A) ( 1901 1gpm_A) 0.6095 0.5287 6.6419 ( 3 19 45) 0 0.6976 0.5287 10 16 ( 5364 1qkk_A) ( 2027 1h05_A) 0.8958 0.8156 6.5887 ( 0 9 36) 0 0.8958 0.8156 10 11 ( 5364 1qkk_A) ( 2427 1i7q_B) 0.8375 0.5427 6.7837 ( 2 20 45) 0 0.8375 0.5427 10 18 ( 5364 1qkk_A) ( 2470 1iex_A) 0.9885 0.8286 7.4701 ( 0 14 45) 0 0.9885 0.8286 10 12 ( 5364 1qkk_A) ( 2714 1j2y_A) 0.8991 0.8176 4.4757 ( 0 13 36) 0 0.8991 0.8176 10 11 ( 5364 1qkk_A) ( 2729 1j4a_A) 0.9883 0.9883 7.4938 ( 0 15 45) 0 0.9883 0.9883 10 10 ( 5364 1qkk_A) ( 2809 1jbe_A) 0.9972 0.9972 5.2230 ( 0 20 45) 0 0.9972 0.9972 10 10 ( 5364 1qkk_A) ( 3034 1jrl_A) 0.8889 0.8889 8.4382 ( 0 12 36) 0 0.8889 0.8889 10 10 ( 5364 1qkk_A) ( 3073 1jvn_A) 0.8902 0.4733 8.1805 ( 0 18 36) 0 0.8902 0.4733 10 19 ( 5364 1qkk_A) ( 3189 1k66_A) 0.9940 0.9054 6.3111 ( 0 20 45) 0 0.9940 0.9054 10 11 ( 5364 1qkk_A) ( 3190 1k68_A) 0.9944 0.9944 6.1994 ( 0 20 45) 0 0.9944 0.9944 10 10 ( 5364 1qkk_A) ( 3199 1k7c_A) 0.8889 0.5985 8.4496 ( 0 14 36) 0 0.8994 0.5999 10 15 ( 5364 1qkk_A) ( 3234 1k9v_F) 0.8903 0.4995 8.1547 ( 0 19 36) 0 0.8903 0.4995 10 18 ( 5364 1qkk_A) ( 3238 1ka9_H) 0.8874 0.5613 8.7188 ( 0 18 36) 0 0.8874 0.5613 10 16 ( 5364 1qkk_A) ( 3295 1kgs_A) 0.8718 0.8718 4.9833 ( 1 15 36) 0 0.8742 0.8742 10 10 ( 5364 1qkk_A) ( 3412 1krw_A) 0.9929 0.9929 6.5986 ( 0 18 45) 0 0.9929 0.9929 10 10 ( 5364 1qkk_A) ( 3462 1kwg_A) 0.8974 0.5623 5.8232 ( 0 14 36) 0 0.8974 0.5623 10 16 ( 5364 1qkk_A) ( 3560 1l7d_A) 0.8434 0.5248 9.0335 ( 1 13 36) 0 0.9795 0.5867 10 17 ( 5364 1qkk_A) ( 3581 1l9x_A) 0.8794 0.3910 6.5541 ( 1 17 36) 0 0.8794 0.4300 10 23 ( 5364 1qkk_A) ( 3632 1li4_A) 0.9853 0.5548 7.9491 ( 0 18 45) 0 0.9853 0.5548 10 18 ( 5364 1qkk_A) ( 3801 1m2e_A) 0.8987 0.9978 4.9214 ( 0 18 36) 0 0.8987 0.9978 10 9 ( 5364 1qkk_A) ( 3896 1mb3_A) 0.9953 0.9953 5.9388 ( 0 21 45) 0 0.9953 0.9953 10 10 ( 5364 1qkk_A) ( 4066 1mx3_A) 0.8868 0.8099 8.8309 ( 0 11 36) 0 0.8872 0.8101 10 11 ( 5364 1qkk_A) ( 4130 1n57_A) 0.7072 0.4823 6.8034 ( 2 16 36) 0 0.8147 0.4943 10 18 ( 5364 1qkk_A) ( 4185 1nat ) 0.9947 0.9947 6.1184 ( 0 18 45) 0 0.9947 0.9947 10 10 ( 5364 1qkk_A) ( 4323 1nni_1) 0.8966 0.8161 6.2576 ( 0 17 36) 0 0.8982 0.8171 10 11 ( 5364 1qkk_A) ( 4433 1ny5_A) 0.9999 0.9999 2.1276 ( 0 18 45) 0 0.9999 0.9999 10 10 ( 5364 1qkk_A) ( 4474 1o1y_A) 0.5596 0.3987 7.2369 ( 2 12 28) 0 0.5928 0.4196 10 19 ( 5364 1qkk_A) ( 4590 1obo_A) 0.8958 0.8958 6.6039 ( 0 17 36) 0 0.8963 0.8963 10 10 ( 5364 1qkk_A) ( 4669 1oi7_A) 0.7999 0.7272 2.5797 ( 0 9 28) 0 0.8913 0.8127 10 11 ( 5364 1qkk_A) ( 4787 1ou0_A) 0.9587 0.5850 6.7310 ( 1 16 45) 0 0.9587 0.5850 10 17 ( 5364 1qkk_A) ( 4813 1oxb_B) 0.9950 0.9950 6.0251 ( 0 22 45) 0 0.9950 0.9950 10 10 ( 5364 1qkk_A) ( 4871 1p2f_A) 0.9962 0.9962 5.6411 ( 0 20 45) 0 0.9962 0.9962 10 10 ( 5364 1qkk_A) ( 4905 1p5f_A) 0.5993 0.4284 7.0789 ( 0 3 15) 0 0.7313 0.5564 10 14 ( 5364 1qkk_A) ( 4916 1p6u_A) 0.8964 0.8964 6.3185 ( 0 15 36) 0 0.8964 0.8964 10 10 ( 5364 1qkk_A) ( 4926 1p80_A) 0.7333 0.6315 5.8975 ( 2 17 36) 0 0.7333 0.6315 10 13 ( 5364 1qkk_A) ( 5096 1psd_A) 0.8891 0.9818 8.4063 ( 0 4 36) 0 0.8891 0.9818 10 9 ( 5364 1qkk_A) ( 5234 1q7r_A) 0.9761 0.5542 4.4966 ( 1 18 45) 0 0.9761 0.5542 10 18 ( 5364 1qkk_A) ( 5289 1qcz_A) 0.8982 0.8982 5.3544 ( 0 13 36) 0 0.8982 0.8982 10 10 ( 5364 1qkk_A) ( 5297 1qdl_B) 0.8952 0.5291 6.8344 ( 0 13 36) 0 0.8952 0.5291 10 17 ( 5364 1qkk_A) ( 5364 1qkk_A) 1.0000 1.0000 0.0000 ( 0 22 45) 0 1.0000 1.0000 10 10 ( 5364 1qkk_A) ( 5397 1qo0_D) 0.8984 0.7494 5.1288 ( 0 16 36) 0 0.8984 0.7494 10 12 ( 5364 1qkk_A) ( 5470 1qvz_A) 0.8911 0.5616 7.9843 ( 0 17 36) 0 0.8911 0.5616 10 16 ( 5364 1qkk_A) ( 5673 1rli_A) 0.9675 0.8197 8.0595 ( 1 19 45) 0 0.9675 0.8197 10 12 ( 5364 1qkk_A) ( 5752 1s2d_A) 0.3995 0.4436 10.5622 ( 0 1 6) 0 0.5987 0.6645 10 9 ( 5364 1qkk_A) ( 5785 1say_A) 0.8924 0.4734 7.6718 ( 0 12 36) 0 0.9648 0.5248 10 19 ( 5364 1qkk_A) ( 5842 1sqs_A) 0.8676 0.6364 7.3075 ( 1 15 36) 0 0.8676 0.6364 10 14 ( 5364 1qkk_A) ( 5920 1tmy ) 0.9957 0.9957 5.8153 ( 0 22 45) 0 0.9957 0.9957 10 10 ( 5364 1qkk_A) ( 6242 1vhq_A) 0.8741 0.6378 6.9944 ( 1 16 36) 0 0.9721 0.7088 10 14 ( 5364 1qkk_A) ( 6258 1vi6_A) 0.4997 0.3845 7.3521 ( 0 2 10) 0 0.4999 0.4351 10 13 ( 5364 1qkk_A) ( 6283 1vjg_A) 0.8933 0.7473 7.4141 ( 0 13 36) 0 0.8933 0.7473 10 12 ( 5364 1qkk_A) ( 6496 2nac_A) 0.9884 0.7660 7.4873 ( 0 14 45) 0 0.9884 0.7660 10 13 ( 5364 1qkk_A) ( 6624 5nul ) 0.7315 0.7315 7.6699 ( 2 17 36) 0 0.8869 0.8869 10 10 ( 5364 1qkk_A) ( 6640 7req_A) 0.9977 0.8324 4.9608 ( 0 20 45) 0 0.9977 0.8324 10 12 ( 5364 1qkk_A) ( 6642 7req_B) 0.9964 0.7683 5.5612 ( 0 16 45) 0 0.9964 0.7683 10 13 -------------------------------------------------------------------------------------------------------------------------