------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5470 1qvz_A) ( 6 1a04_A) 0.5464 0.7329 4.5038 ( 2 19 36) 0 0.5826 0.7329 16 11 ( 5470 1qvz_A) ( 26 1a2o_A) 0.5611 0.8854 4.7087 ( 1 18 36) 0 0.5611 0.8854 16 10 ( 5470 1qvz_A) ( 90 1a9x_B) 0.6244 0.5552 3.2967 ( 1 26 45) 0 0.6244 0.5552 16 18 ( 5470 1qvz_A) ( 256 1b00_A) 0.4985 0.7845 3.1634 ( 1 15 28) 0 0.4996 0.7957 16 10 ( 5470 1qvz_A) ( 266 1b1c_A) 0.5427 0.7175 5.7708 ( 2 18 36) 0 0.5428 0.7181 16 11 ( 5470 1qvz_A) ( 428 1bmt_A) 0.5613 0.8107 4.6649 ( 1 19 36) 0 0.5613 0.8107 16 11 ( 5470 1qvz_A) ( 477 1bvy_F) 0.5464 0.8182 4.0361 ( 2 19 36) 0 0.5464 0.8886 16 9 ( 5470 1qvz_A) ( 523 1c4k_A) 0.4961 0.9024 6.3889 ( 1 12 28) 0 0.4961 0.9024 16 8 ( 5470 1qvz_A) ( 562 1ccw_A) 0.4111 0.5386 2.9789 ( 2 12 21) 0 0.5442 0.7811 16 10 ( 5470 1qvz_A) ( 745 1d4a_A) 0.5513 0.5848 5.2518 ( 2 21 36) 0 0.6149 0.6528 16 15 ( 5470 1qvz_A) ( 786 1dbw_A) 0.5607 0.8818 5.0328 ( 1 17 36) 0 0.6235 0.9851 16 10 ( 5470 1qvz_A) ( 793 1dcf_A) 0.5491 0.7927 4.8208 ( 2 20 36) 0 0.5491 0.7927 16 10 ( 5470 1qvz_A) ( 971 1dxy ) 0.4638 0.6102 5.0803 ( 2 13 28) 0 0.4638 0.6959 16 9 ( 5470 1qvz_A) ( 980 1dz3_A) 0.4984 0.7842 4.3110 ( 1 15 28) 0 0.5623 0.8979 16 10 ( 5470 1qvz_A) ( 1042 1e5d_A) 0.5324 0.7081 5.3616 ( 2 16 36) 0 0.5573 0.8517 16 10 ( 5470 1qvz_A) ( 1177 1eiw_A) 0.5491 0.8401 4.7623 ( 2 20 36) 0 0.5622 0.9950 16 9 ( 5470 1qvz_A) ( 1252 1es9_A) 0.5602 0.7405 5.3739 ( 1 16 36) 0 0.5616 0.7463 16 12 ( 5470 1qvz_A) ( 1253 1esc ) 0.5607 0.5281 6.8450 ( 1 18 36) 0 0.5607 0.5281 16 17 ( 5470 1qvz_A) ( 1266 1euc_B) 0.5624 0.7494 4.9879 ( 0 15 36) 0 0.6249 0.8330 16 12 ( 5470 1qvz_A) ( 1379 1f2v_A) 0.3125 0.3125 4.2409 ( 0 5 10) 0 0.6870 0.6870 16 16 ( 5470 1qvz_A) ( 1397 1f4p_A) 0.5623 0.9972 5.2119 ( 0 16 36) 0 0.5623 0.9972 16 9 ( 5470 1qvz_A) ( 1443 1f8y_A) 0.4718 0.5994 5.0032 ( 2 14 28) 0 0.4718 0.5994 16 11 ( 5470 1qvz_A) ( 1516 1fjg_B) 0.4375 0.5833 3.8696 ( 0 5 21) 0 0.4984 0.6601 16 12 ( 5470 1qvz_A) ( 1547 1flc_A) 0.2500 0.2222 10.2669 ( 0 4 6) 0 0.5610 0.4992 16 18 ( 5470 1qvz_A) ( 1659 1fye_A) 0.3750 0.3333 2.6248 ( 0 10 15) 0 0.6833 0.6207 16 18 ( 5470 1qvz_A) ( 1662 1fyx_A) 0.3125 0.4999 4.6153 ( 0 6 10) 0 0.5325 0.7083 16 10 ( 5470 1qvz_A) ( 1700 1g2i_A) 0.7377 0.8338 2.2847 ( 3 44 66) 0 0.7377 0.8338 16 14 ( 5470 1qvz_A) ( 1803 1gdh_A) 0.2500 0.4000 5.1923 ( 0 1 6) 0 0.4887 0.7083 16 10 ( 5470 1qvz_A) ( 1901 1gpm_A) 0.6247 0.6247 2.9739 ( 1 30 45) 0 0.6247 0.6247 16 16 ( 5470 1qvz_A) ( 2027 1h05_A) 0.3125 0.4545 3.1576 ( 0 4 10) 0 0.5860 0.7370 16 11 ( 5470 1qvz_A) ( 2427 1i7q_B) 0.5970 0.5393 3.7085 ( 3 28 45) 0 0.5970 0.5393 16 18 ( 5470 1qvz_A) ( 2470 1iex_A) 0.3125 0.4167 3.9255 ( 0 4 10) 0 0.5603 0.7411 16 12 ( 5470 1qvz_A) ( 2714 1j2y_A) 0.3125 0.4545 3.2277 ( 0 4 10) 0 0.5027 0.6378 16 11 ( 5470 1qvz_A) ( 2729 1j4a_A) 0.3624 0.3770 5.3774 ( 5 19 36) 0 0.5000 0.7996 16 10 ( 5470 1qvz_A) ( 2809 1jbe_A) 0.5607 0.8817 5.1331 ( 1 17 36) 0 0.5607 0.8817 16 10 ( 5470 1qvz_A) ( 3034 1jrl_A) 0.4389 0.5228 5.5984 ( 2 11 28) 0 0.4673 0.6235 16 10 ( 5470 1qvz_A) ( 3073 1jvn_A) 0.6341 0.5541 3.2347 ( 4 35 55) 0 0.6868 0.5787 16 19 ( 5470 1qvz_A) ( 3189 1k66_A) 0.6248 0.9080 4.6436 ( 0 24 45) 0 0.6248 0.9080 16 11 ( 5470 1qvz_A) ( 3190 1k68_A) 0.5624 0.8995 3.9223 ( 0 16 36) 0 0.6248 0.9980 16 10 ( 5470 1qvz_A) ( 3199 1k7c_A) 0.3070 0.3258 7.4801 ( 1 6 10) 0 0.4973 0.5296 16 15 ( 5470 1qvz_A) ( 3234 1k9v_F) 0.6246 0.5554 2.6935 ( 1 29 45) 0 0.6246 0.5554 16 18 ( 5470 1qvz_A) ( 3238 1ka9_H) 0.5443 0.5443 3.8938 ( 6 37 55) 0 0.5547 0.5547 16 16 ( 5470 1qvz_A) ( 3295 1kgs_A) 0.4962 0.7642 4.9134 ( 1 12 28) 0 0.5624 0.8985 16 10 ( 5470 1qvz_A) ( 3412 1krw_A) 0.5624 0.8993 4.1808 ( 0 17 36) 0 0.6232 0.9822 16 10 ( 5470 1qvz_A) ( 3462 1kwg_A) 0.6250 0.6250 3.3193 ( 0 23 45) 0 0.6867 0.6867 16 16 ( 5470 1qvz_A) ( 3560 1l7d_A) 0.3125 0.2941 4.1712 ( 0 3 10) 0 0.4282 0.4048 16 17 ( 5470 1qvz_A) ( 3581 1l9x_A) 0.6341 0.4681 4.2281 ( 4 35 55) 0 0.6341 0.4681 16 23 ( 5470 1qvz_A) ( 3632 1li4_A) 0.5532 0.4948 3.5358 ( 2 22 36) 0 0.5532 0.4948 16 18 ( 5470 1qvz_A) ( 3801 1m2e_A) 0.4375 0.7776 3.5807 ( 0 10 21) 0 0.4999 0.8875 16 9 ( 5470 1qvz_A) ( 3896 1mb3_A) 0.5611 0.8857 4.4406 ( 1 18 36) 0 0.5611 0.8857 16 10 ( 5470 1qvz_A) ( 4066 1mx3_A) 0.4999 0.7267 5.1500 ( 0 9 28) 0 0.5155 0.7270 16 11 ( 5470 1qvz_A) ( 4130 1n57_A) 0.8123 0.7221 2.6657 ( 1 54 78) 0 0.8123 0.7221 16 18 ( 5470 1qvz_A) ( 4185 1nat ) 0.5624 0.8991 4.4859 ( 0 14 36) 0 0.6212 0.9631 16 10 ( 5470 1qvz_A) ( 4323 1nni_1) 0.6242 0.9038 4.8957 ( 1 25 45) 0 0.6242 0.9038 16 11 ( 5470 1qvz_A) ( 4433 1ny5_A) 0.5619 0.8938 7.2753 ( 0 14 36) 0 0.5619 0.8938 16 10 ( 5470 1qvz_A) ( 4474 1o1y_A) 0.5970 0.5138 3.4151 ( 3 28 45) 0 0.6680 0.5704 16 19 ( 5470 1qvz_A) ( 4590 1obo_A) 0.4984 0.7839 5.0050 ( 1 15 28) 0 0.4984 0.7839 16 10 ( 5470 1qvz_A) ( 4669 1oi7_A) 0.4999 0.7269 4.6776 ( 0 12 28) 0 0.5592 0.7979 16 11 ( 5470 1qvz_A) ( 4787 1ou0_A) 0.5607 0.5281 4.4538 ( 1 17 36) 0 0.6237 0.5872 16 17 ( 5470 1qvz_A) ( 4813 1oxb_B) 0.5155 0.6473 4.7475 ( 3 21 36) 0 0.5155 0.6610 16 10 ( 5470 1qvz_A) ( 4871 1p2f_A) 0.5607 0.8820 4.9172 ( 1 17 36) 0 0.5607 0.8820 16 10 ( 5470 1qvz_A) ( 4905 1p5f_A) 0.7497 0.8566 3.5397 ( 1 44 66) 0 0.7497 0.8566 16 14 ( 5470 1qvz_A) ( 4916 1p6u_A) 0.5000 0.7996 4.3294 ( 0 16 28) 0 0.5000 0.7996 16 10 ( 5470 1qvz_A) ( 4926 1p80_A) 0.6209 0.7580 2.2612 ( 2 31 45) 0 0.6209 0.7580 16 13 ( 5470 1qvz_A) ( 5096 1psd_A) 0.2500 0.4444 4.7453 ( 0 0 6) 0 0.4375 0.7775 16 9 ( 5470 1qvz_A) ( 5234 1q7r_A) 0.6189 0.5521 4.0184 ( 2 28 45) 0 0.6189 0.5521 16 18 ( 5470 1qvz_A) ( 5289 1qcz_A) 0.4979 0.7793 4.9961 ( 1 14 28) 0 0.5607 0.8819 16 10 ( 5470 1qvz_A) ( 5297 1qdl_B) 0.6244 0.5878 3.2096 ( 1 26 45) 0 0.6244 0.5878 16 17 ( 5470 1qvz_A) ( 5364 1qkk_A) 0.5616 0.8911 7.9843 ( 0 17 36) 0 0.5616 0.8911 16 10 ( 5470 1qvz_A) ( 5397 1qo0_D) 0.5366 0.6613 10.0195 ( 2 17 36) 0 0.5366 0.6613 16 12 ( 5470 1qvz_A) ( 5470 1qvz_A) 1.0000 1.0000 0.0000 ( 0 92 120) 0 1.0000 1.0000 16 16 ( 5470 1qvz_A) ( 5673 1rli_A) 0.6247 0.8319 5.4934 ( 0 27 45) 0 0.6247 0.8319 16 12 ( 5470 1qvz_A) ( 5752 1s2d_A) 0.4316 0.6959 4.6029 ( 1 9 21) 0 0.4823 0.7037 16 9 ( 5470 1qvz_A) ( 5785 1say_A) 0.3104 0.2623 12.8518 ( 1 8 10) 0 0.6223 0.5252 16 19 ( 5470 1qvz_A) ( 5842 1sqs_A) 0.5603 0.6385 4.8435 ( 1 16 36) 0 0.6137 0.6929 16 14 ( 5470 1qvz_A) ( 5920 1tmy ) 0.5624 0.8990 4.6389 ( 0 17 36) 0 0.5624 0.8990 16 10 ( 5470 1qvz_A) ( 6242 1vhq_A) 0.7467 0.8507 2.1849 ( 2 41 66) 0 0.7467 0.8507 16 14 ( 5470 1qvz_A) ( 6258 1vi6_A) 0.3124 0.3845 8.3898 ( 0 4 10) 0 0.6166 0.7466 16 13 ( 5470 1qvz_A) ( 6283 1vjg_A) 0.4717 0.5732 6.9967 ( 2 14 28) 0 0.6108 0.7798 16 12 ( 5470 1qvz_A) ( 6496 2nac_A) 0.3501 0.4026 5.9782 ( 2 10 15) 0 0.6166 0.7465 16 13 ( 5470 1qvz_A) ( 6624 5nul ) 0.5382 0.7337 5.2513 ( 2 17 36) 0 0.5832 0.7997 16 10 ( 5470 1qvz_A) ( 6640 7req_A) 0.4983 0.5713 5.5269 ( 3 19 36) 0 0.4983 0.5899 16 12 ( 5470 1qvz_A) ( 6642 7req_B) 0.3964 0.4060 4.0696 ( 7 29 45) 0 0.5491 0.6571 16 13 -------------------------------------------------------------------------------------------------------------------------