------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5673 1rli_A) ( 6 1a04_A) 0.7662 0.8127 4.4009 ( 2 21 45) 0 0.7662 0.8127 12 11 ( 5673 1rli_A) ( 26 1a2o_A) 0.7441 0.8856 4.4740 ( 1 18 36) 0 0.7441 0.8856 12 10 ( 5673 1rli_A) ( 90 1a9x_B) 0.7452 0.4994 4.4737 ( 1 19 36) 0 0.7454 0.4994 12 18 ( 5673 1rli_A) ( 256 1b00_A) 0.7494 0.8985 5.0725 ( 0 17 36) 0 0.7494 0.8985 12 10 ( 5673 1rli_A) ( 266 1b1c_A) 0.5266 0.5329 4.4819 ( 4 22 45) 0 0.7343 0.7944 12 11 ( 5673 1rli_A) ( 428 1bmt_A) 0.8282 0.9012 4.9987 ( 1 22 45) 0 0.8282 0.9012 12 11 ( 5673 1rli_A) ( 477 1bvy_F) 0.6796 0.7931 3.7217 ( 2 18 36) 0 0.6796 0.8875 12 9 ( 5673 1rli_A) ( 523 1c4k_A) 0.6657 0.9924 6.7096 ( 0 9 28) 0 0.6657 0.9924 12 8 ( 5673 1rli_A) ( 562 1ccw_A) 0.6906 0.7759 4.7767 ( 2 19 36) 0 0.6906 0.7996 12 10 ( 5673 1rli_A) ( 745 1d4a_A) 0.8329 0.6665 4.0759 ( 0 26 45) 0 0.8329 0.6665 12 15 ( 5673 1rli_A) ( 786 1dbw_A) 0.7660 0.8597 4.7273 ( 2 21 45) 0 0.7660 0.8960 12 10 ( 5673 1rli_A) ( 793 1dcf_A) 0.7442 0.8859 4.0946 ( 1 18 36) 0 0.7442 0.8859 12 10 ( 5673 1rli_A) ( 971 1dxy ) 0.6662 0.8871 5.4088 ( 0 12 28) 0 0.6664 0.8880 12 9 ( 5673 1rli_A) ( 980 1dz3_A) 0.7428 0.8825 4.2503 ( 1 17 36) 0 0.7428 0.8825 12 10 ( 5673 1rli_A) ( 1042 1e5d_A) 0.6519 0.6880 4.4924 ( 3 22 45) 0 0.8301 0.9920 12 10 ( 5673 1rli_A) ( 1177 1eiw_A) 0.6662 0.8871 5.3839 ( 0 12 28) 0 0.6662 0.8871 12 9 ( 5673 1rli_A) ( 1252 1es9_A) 0.4995 0.4995 7.9482 ( 0 1 15) 0 0.7463 0.7463 12 12 ( 5673 1rli_A) ( 1253 1esc ) 0.6660 0.4705 5.9778 ( 0 13 28) 0 0.6789 0.5144 12 17 ( 5673 1rli_A) ( 1266 1euc_B) 0.8232 0.8232 4.9580 ( 1 18 45) 0 0.8232 0.8232 12 12 ( 5673 1rli_A) ( 1379 1f2v_A) 0.8322 0.6247 5.2081 ( 0 18 45) 0 0.8322 0.6247 12 16 ( 5673 1rli_A) ( 1397 1f4p_A) 0.6661 0.7651 3.8349 ( 2 17 36) 0 0.7491 0.9962 12 9 ( 5673 1rli_A) ( 1443 1f8y_A) 0.6554 0.7101 4.7837 ( 1 13 28) 0 0.6554 0.7101 12 11 ( 5673 1rli_A) ( 1516 1fjg_B) 0.4488 0.4488 5.0289 ( 1 5 21) 0 0.5720 0.5720 12 12 ( 5673 1rli_A) ( 1547 1flc_A) 0.5832 0.3889 4.5896 ( 0 7 21) 0 0.5832 0.4530 12 18 ( 5673 1rli_A) ( 1659 1fye_A) 0.5000 0.3333 4.3374 ( 0 4 15) 0 0.7837 0.5678 12 18 ( 5673 1rli_A) ( 1662 1fyx_A) 0.6147 0.6912 6.2769 ( 2 17 28) 0 0.6147 0.6912 12 10 ( 5673 1rli_A) ( 1700 1g2i_A) 0.8304 0.7129 5.4493 ( 1 28 45) 0 0.8304 0.7129 12 14 ( 5673 1rli_A) ( 1803 1gdh_A) 0.7300 0.8534 5.1932 ( 1 13 36) 0 0.7300 0.8534 12 10 ( 5673 1rli_A) ( 1901 1gpm_A) 0.6583 0.4980 3.5470 ( 1 14 28) 0 0.7427 0.5608 12 16 ( 5673 1rli_A) ( 2027 1h05_A) 0.7496 0.8175 4.6425 ( 0 9 36) 0 0.7496 0.8175 12 11 ( 5673 1rli_A) ( 2427 1i7q_B) 0.7453 0.4994 4.0408 ( 1 19 36) 0 0.7456 0.5310 12 18 ( 5673 1rli_A) ( 2470 1iex_A) 0.6858 0.6858 4.4568 ( 2 16 45) 0 0.7381 0.7381 12 12 ( 5673 1rli_A) ( 2714 1j2y_A) 0.7433 0.8079 6.0646 ( 1 18 36) 0 0.7486 0.8160 12 11 ( 5673 1rli_A) ( 2729 1j4a_A) 0.7412 0.8787 6.8464 ( 1 17 36) 0 0.7482 0.8955 12 10 ( 5673 1rli_A) ( 2809 1jbe_A) 0.7351 0.8647 4.0711 ( 1 14 36) 0 0.7403 0.8766 12 10 ( 5673 1rli_A) ( 3034 1jrl_A) 0.6452 0.7507 6.3215 ( 1 11 28) 0 0.6658 0.7977 12 10 ( 5673 1rli_A) ( 3073 1jvn_A) 0.7440 0.4731 4.7114 ( 1 18 36) 0 0.7452 0.5119 12 19 ( 5673 1rli_A) ( 3189 1k66_A) 0.9132 0.9947 4.3064 ( 1 28 55) 0 0.9132 0.9947 12 11 ( 5673 1rli_A) ( 3190 1k68_A) 0.8234 0.9761 4.5496 ( 1 18 45) 0 0.8234 0.9761 12 10 ( 5673 1rli_A) ( 3199 1k7c_A) 0.6302 0.5504 6.0154 ( 2 15 36) 0 0.7465 0.6182 12 15 ( 5673 1rli_A) ( 3234 1k9v_F) 0.7255 0.5369 5.3228 ( 3 27 45) 0 0.7255 0.5369 12 18 ( 5673 1rli_A) ( 3238 1ka9_H) 0.6323 0.5525 5.7369 ( 4 28 45) 0 0.7073 0.5525 12 16 ( 5673 1rli_A) ( 3295 1kgs_A) 0.7301 0.8537 4.8726 ( 1 13 36) 0 0.7495 0.8988 12 10 ( 5673 1rli_A) ( 3412 1krw_A) 0.7071 0.7645 5.1840 ( 2 17 45) 0 0.7496 0.8989 12 10 ( 5673 1rli_A) ( 3462 1kwg_A) 0.7493 0.5623 5.2272 ( 0 16 36) 0 0.7493 0.5623 12 16 ( 5673 1rli_A) ( 3560 1l7d_A) 0.7492 0.5293 5.4652 ( 0 14 36) 0 0.8297 0.5876 12 17 ( 5673 1rli_A) ( 3581 1l9x_A) 0.7076 0.3894 4.5801 ( 2 21 36) 0 0.7892 0.4328 12 23 ( 5673 1rli_A) ( 3632 1li4_A) 0.7394 0.5758 5.5474 ( 4 34 55) 0 0.9641 0.6616 12 18 ( 5673 1rli_A) ( 3801 1m2e_A) 0.6516 0.8319 4.0029 ( 1 12 28) 0 0.7422 0.9687 12 9 ( 5673 1rli_A) ( 3896 1mb3_A) 0.8277 0.9862 4.3735 ( 1 21 45) 0 0.8277 0.9862 12 10 ( 5673 1rli_A) ( 4066 1mx3_A) 0.7382 0.8002 5.0072 ( 1 15 36) 0 0.7491 0.8168 12 11 ( 5673 1rli_A) ( 4130 1n57_A) 0.6516 0.4424 3.3558 ( 1 12 28) 0 0.6795 0.4887 12 18 ( 5673 1rli_A) ( 4185 1nat ) 0.8183 0.9642 4.0813 ( 1 16 45) 0 0.8183 0.9642 12 10 ( 5673 1rli_A) ( 4323 1nni_1) 0.8952 0.9676 4.4020 ( 2 33 55) 0 0.8952 0.9676 12 11 ( 5673 1rli_A) ( 4433 1ny5_A) 0.8148 0.9563 7.2894 ( 1 16 45) 0 0.8148 0.9563 12 10 ( 5673 1rli_A) ( 4474 1o1y_A) 0.5833 0.3684 3.7109 ( 0 8 21) 0 0.5833 0.3684 12 19 ( 5673 1rli_A) ( 4590 1obo_A) 0.7453 0.8886 3.7103 ( 1 19 36) 0 0.7453 0.8886 12 10 ( 5673 1rli_A) ( 4669 1oi7_A) 0.6516 0.7045 3.9512 ( 1 12 28) 0 0.7289 0.7865 12 11 ( 5673 1rli_A) ( 4787 1ou0_A) 0.7346 0.5266 5.3999 ( 1 14 36) 0 0.7346 0.5392 12 17 ( 5673 1rli_A) ( 4813 1oxb_B) 0.7443 0.8860 3.8729 ( 1 18 36) 0 0.7443 0.8860 12 10 ( 5673 1rli_A) ( 4871 1p2f_A) 0.7496 0.8991 4.4746 ( 0 15 36) 0 0.7496 0.8991 12 10 ( 5673 1rli_A) ( 4905 1p5f_A) 0.9149 0.7849 5.1825 ( 0 32 55) 0 0.9149 0.7849 12 14 ( 5673 1rli_A) ( 4916 1p6u_A) 0.7960 0.9166 4.6348 ( 2 25 45) 0 0.7960 0.9166 12 10 ( 5673 1rli_A) ( 4926 1p80_A) 0.8079 0.7518 5.4348 ( 2 28 45) 0 0.8079 0.7518 12 13 ( 5673 1rli_A) ( 5096 1psd_A) 0.6662 0.8868 5.6053 ( 0 5 28) 0 0.6662 0.8868 12 9 ( 5673 1rli_A) ( 5234 1q7r_A) 0.7127 0.5677 5.9213 ( 4 32 55) 0 0.7436 0.5677 12 18 ( 5673 1rli_A) ( 5289 1qcz_A) 0.7425 0.8818 5.0312 ( 1 17 36) 0 0.7425 0.8818 12 10 ( 5673 1rli_A) ( 5297 1qdl_B) 0.7453 0.5286 4.0061 ( 1 19 36) 0 0.7453 0.5516 12 17 ( 5673 1rli_A) ( 5364 1qkk_A) 0.8197 0.9675 8.0595 ( 1 19 45) 0 0.8197 0.9675 12 10 ( 5673 1rli_A) ( 5397 1qo0_D) 0.7253 0.7253 11.3748 ( 1 15 36) 0 0.7490 0.7490 12 12 ( 5673 1rli_A) ( 5470 1qvz_A) 0.8319 0.6247 5.4934 ( 0 27 45) 0 0.8319 0.6247 12 16 ( 5673 1rli_A) ( 5673 1rli_A) 1.0000 1.0000 0.0000 ( 0 47 66) 0 1.0000 1.0000 12 12 ( 5673 1rli_A) ( 5752 1s2d_A) 0.4999 0.6664 4.9548 ( 0 4 15) 0 0.4999 0.6664 12 9 ( 5673 1rli_A) ( 5785 1say_A) 0.7629 0.5564 5.3131 ( 3 27 55) 0 0.8271 0.5564 12 19 ( 5673 1rli_A) ( 5842 1sqs_A) 0.7908 0.6934 2.8823 ( 2 24 45) 0 0.7908 0.6934 12 14 ( 5673 1rli_A) ( 5920 1tmy ) 0.7662 0.8601 4.2005 ( 2 21 45) 0 0.7662 0.8826 12 10 ( 5673 1rli_A) ( 6242 1vhq_A) 0.8298 0.7126 5.7824 ( 1 27 45) 0 0.9085 0.7819 12 14 ( 5673 1rli_A) ( 6258 1vi6_A) 0.4166 0.3846 5.1823 ( 0 2 10) 0 0.6457 0.6010 12 13 ( 5673 1rli_A) ( 6283 1vjg_A) 0.7440 0.7440 6.4888 ( 1 19 36) 0 0.7494 0.7494 12 12 ( 5673 1rli_A) ( 6496 2nac_A) 0.7228 0.6736 6.0560 ( 1 12 36) 0 0.7492 0.7024 12 13 ( 5673 1rli_A) ( 6624 5nul ) 0.7468 0.8921 3.7547 ( 1 21 36) 0 0.7491 0.8977 12 10 ( 5673 1rli_A) ( 6640 7req_A) 0.7834 0.7834 4.9628 ( 2 23 45) 0 0.8279 0.8279 12 12 ( 5673 1rli_A) ( 6642 7req_B) 0.7949 0.7427 6.1400 ( 2 25 45) 0 0.7949 0.7427 12 13 -------------------------------------------------------------------------------------------------------------------------