------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5752 1s2d_A) ( 6 1a04_A) 0.6650 0.5448 7.6349 ( 0 5 15) 0 0.6650 0.5448 9 11 ( 5752 1s2d_A) ( 26 1a2o_A) 0.4444 0.4000 3.6780 ( 0 4 6) 0 0.5737 0.5386 9 10 ( 5752 1s2d_A) ( 90 1a9x_B) 0.4439 0.2222 9.6389 ( 0 2 6) 0 0.6959 0.3937 9 18 ( 5752 1s2d_A) ( 256 1b00_A) 0.5288 0.5045 4.8865 ( 1 6 15) 0 0.5288 0.5045 9 10 ( 5752 1s2d_A) ( 266 1b1c_A) 0.6097 0.5741 6.7319 ( 2 13 28) 0 0.6954 0.6014 9 11 ( 5752 1s2d_A) ( 428 1bmt_A) 0.5555 0.4545 3.7912 ( 0 5 10) 0 0.5555 0.4545 9 11 ( 5752 1s2d_A) ( 477 1bvy_F) 0.8312 0.8312 5.1340 ( 1 12 28) 0 0.8312 0.8312 9 9 ( 5752 1s2d_A) ( 523 1c4k_A) 0.5555 0.6249 3.8935 ( 0 3 10) 0 0.5555 0.6249 9 8 ( 5752 1s2d_A) ( 562 1ccw_A) 0.4444 0.4000 5.4484 ( 0 2 6) 0 0.4444 0.4000 9 10 ( 5752 1s2d_A) ( 745 1d4a_A) 0.4444 0.2667 3.0110 ( 0 1 6) 0 0.6624 0.4540 9 15 ( 5752 1s2d_A) ( 786 1dbw_A) 0.4444 0.4000 5.0601 ( 0 1 6) 0 0.4806 0.4719 9 10 ( 5752 1s2d_A) ( 793 1dcf_A) 0.5554 0.4999 4.9352 ( 0 4 10) 0 0.6656 0.5994 9 10 ( 5752 1s2d_A) ( 971 1dxy ) 0.6956 0.6956 5.4608 ( 1 9 21) 0 0.6956 0.6956 9 9 ( 5752 1s2d_A) ( 980 1dz3_A) 0.5555 0.5000 3.1610 ( 0 4 10) 0 0.6625 0.6233 9 10 ( 5752 1s2d_A) ( 1042 1e5d_A) 0.6663 0.5998 5.3305 ( 0 7 15) 0 0.7719 0.6965 9 10 ( 5752 1s2d_A) ( 1177 1eiw_A) 0.8458 0.8458 3.3384 ( 1 13 28) 0 0.8458 0.8458 9 9 ( 5752 1s2d_A) ( 1252 1es9_A) 0.4444 0.3333 6.0889 ( 0 1 6) 0 0.6622 0.5478 9 12 ( 5752 1s2d_A) ( 1253 1esc ) 0.5549 0.2941 7.6900 ( 0 3 10) 0 0.6164 0.4002 9 17 ( 5752 1s2d_A) ( 1266 1euc_B) 0.5554 0.4166 5.1089 ( 0 5 10) 0 0.7765 0.5830 9 12 ( 5752 1s2d_A) ( 1379 1f2v_A) 0.5722 0.4531 5.0545 ( 2 12 28) 0 0.8124 0.4947 9 16 ( 5752 1s2d_A) ( 1397 1f4p_A) 0.6663 0.6663 5.1646 ( 0 7 15) 0 0.7866 0.7866 9 9 ( 5752 1s2d_A) ( 1443 1f8y_A) 0.7521 0.6265 7.2574 ( 1 13 21) 0 0.8105 0.6948 9 11 ( 5752 1s2d_A) ( 1516 1fjg_B) 0.6666 0.5000 3.8151 ( 0 4 15) 0 0.7775 0.5833 9 12 ( 5752 1s2d_A) ( 1547 1flc_A) 0.4443 0.2222 6.6985 ( 0 2 6) 0 0.7771 0.3889 9 18 ( 5752 1s2d_A) ( 1659 1fye_A) 0.5554 0.2778 4.9231 ( 0 3 10) 0 0.8450 0.4429 9 18 ( 5752 1s2d_A) ( 1662 1fyx_A) 0.7465 0.6809 4.3082 ( 1 12 21) 0 0.7465 0.6809 9 10 ( 5752 1s2d_A) ( 1700 1g2i_A) 0.5737 0.4147 4.3499 ( 1 7 15) 0 0.6956 0.5212 9 14 ( 5752 1s2d_A) ( 1803 1gdh_A) 0.6662 0.5997 5.4101 ( 0 5 15) 0 0.7513 0.7081 9 10 ( 5752 1s2d_A) ( 1901 1gpm_A) 0.5553 0.3125 5.7618 ( 0 5 10) 0 0.7190 0.4335 9 16 ( 5752 1s2d_A) ( 2027 1h05_A) 0.4881 0.4754 5.1408 ( 1 5 28) 0 0.8308 0.7040 9 11 ( 5752 1s2d_A) ( 2427 1i7q_B) 0.7188 0.3867 5.4834 ( 1 10 21) 0 0.7188 0.4028 9 18 ( 5752 1s2d_A) ( 2470 1iex_A) 0.5555 0.4166 4.5598 ( 0 5 10) 0 0.6665 0.5000 9 12 ( 5752 1s2d_A) ( 2714 1j2y_A) 0.4444 0.3636 4.2242 ( 0 0 6) 0 0.6447 0.5991 9 11 ( 5752 1s2d_A) ( 2729 1j4a_A) 0.6957 0.6471 5.3835 ( 1 9 21) 0 0.6957 0.6471 9 10 ( 5752 1s2d_A) ( 2809 1jbe_A) 0.5554 0.4999 4.7927 ( 0 4 10) 0 0.6646 0.5988 9 10 ( 5752 1s2d_A) ( 3034 1jrl_A) 0.5554 0.4999 5.4180 ( 0 2 10) 0 0.6660 0.5996 9 10 ( 5752 1s2d_A) ( 3073 1jvn_A) 0.7353 0.3673 4.4907 ( 1 11 21) 0 0.8816 0.4209 9 19 ( 5752 1s2d_A) ( 3189 1k66_A) 0.5555 0.4545 4.6618 ( 0 5 10) 0 0.7758 0.6356 9 11 ( 5752 1s2d_A) ( 3190 1k68_A) 0.4444 0.4000 3.9879 ( 0 2 6) 0 0.7759 0.6989 9 10 ( 5752 1s2d_A) ( 3199 1k7c_A) 0.4440 0.2666 9.1958 ( 0 3 6) 0 0.7774 0.4666 9 15 ( 5752 1s2d_A) ( 3234 1k9v_F) 0.6666 0.3333 3.8286 ( 0 5 15) 0 0.7349 0.4027 9 18 ( 5752 1s2d_A) ( 3238 1ka9_H) 0.7352 0.4348 4.4944 ( 1 11 21) 0 0.7353 0.4348 9 16 ( 5752 1s2d_A) ( 3295 1kgs_A) 0.4444 0.4000 3.3732 ( 0 1 6) 0 0.4444 0.4326 9 10 ( 5752 1s2d_A) ( 3412 1krw_A) 0.5736 0.5385 5.1663 ( 1 7 15) 0 0.8838 0.7970 9 10 ( 5752 1s2d_A) ( 3462 1kwg_A) 0.4840 0.3070 5.4318 ( 1 6 10) 0 0.6102 0.4638 9 16 ( 5752 1s2d_A) ( 3560 1l7d_A) 0.5554 0.2941 5.1018 ( 0 4 10) 0 0.6664 0.3896 9 17 ( 5752 1s2d_A) ( 3581 1l9x_A) 0.6369 0.3805 5.4325 ( 3 20 36) 0 0.7855 0.3805 9 23 ( 5752 1s2d_A) ( 3632 1li4_A) 0.5554 0.2778 5.1489 ( 0 2 10) 0 0.8838 0.4443 9 18 ( 5752 1s2d_A) ( 3801 1m2e_A) 0.4840 0.4840 3.5174 ( 1 6 10) 0 0.6169 0.6169 9 9 ( 5752 1s2d_A) ( 3896 1mb3_A) 0.5555 0.5000 3.7814 ( 0 5 10) 0 0.5555 0.5000 9 10 ( 5752 1s2d_A) ( 4066 1mx3_A) 0.6662 0.5453 5.5008 ( 0 5 15) 0 0.7762 0.6645 9 11 ( 5752 1s2d_A) ( 4130 1n57_A) 0.6626 0.3836 5.3913 ( 1 8 21) 0 0.8854 0.4443 9 18 ( 5752 1s2d_A) ( 4185 1nat ) 0.4444 0.4000 3.6169 ( 0 0 6) 0 0.6665 0.5999 9 10 ( 5752 1s2d_A) ( 4323 1nni_1) 0.4879 0.4751 7.5829 ( 3 15 28) 0 0.7744 0.6351 9 11 ( 5752 1s2d_A) ( 4433 1ny5_A) 0.4444 0.4000 5.0602 ( 0 2 6) 0 0.5555 0.5000 9 10 ( 5752 1s2d_A) ( 4474 1o1y_A) 0.6628 0.3644 4.6649 ( 1 8 21) 0 0.7046 0.4133 9 19 ( 5752 1s2d_A) ( 4590 1obo_A) 0.6628 0.6235 4.8607 ( 1 8 21) 0 0.6664 0.6235 9 10 ( 5752 1s2d_A) ( 4669 1oi7_A) 0.5554 0.4545 4.9191 ( 0 5 10) 0 0.5554 0.4545 9 11 ( 5752 1s2d_A) ( 4787 1ou0_A) 0.5555 0.2941 4.2692 ( 0 4 10) 0 0.6626 0.4048 9 17 ( 5752 1s2d_A) ( 4813 1oxb_B) 0.5555 0.5000 3.5515 ( 0 4 10) 0 0.5555 0.5000 9 10 ( 5752 1s2d_A) ( 4871 1p2f_A) 0.4444 0.4000 3.1784 ( 0 0 6) 0 0.6660 0.5996 9 10 ( 5752 1s2d_A) ( 4905 1p5f_A) 0.5314 0.4710 4.8542 ( 2 11 28) 0 0.7351 0.4947 9 14 ( 5752 1s2d_A) ( 4916 1p6u_A) 0.5553 0.4998 6.0803 ( 0 2 10) 0 0.5553 0.5045 9 10 ( 5752 1s2d_A) ( 4926 1p80_A) 0.7191 0.5276 4.7863 ( 1 10 21) 0 0.7191 0.5602 9 13 ( 5752 1s2d_A) ( 5096 1psd_A) 0.5553 0.5553 5.8405 ( 0 2 10) 0 0.6432 0.6432 9 9 ( 5752 1s2d_A) ( 5234 1q7r_A) 0.5553 0.2778 5.8566 ( 0 4 10) 0 0.6958 0.4066 9 18 ( 5752 1s2d_A) ( 5289 1qcz_A) 0.4438 0.3996 10.0132 ( 0 1 6) 0 0.6665 0.5999 9 10 ( 5752 1s2d_A) ( 5297 1qdl_B) 0.5552 0.2941 6.3400 ( 0 1 10) 0 0.6643 0.3784 9 17 ( 5752 1s2d_A) ( 5364 1qkk_A) 0.4436 0.3995 10.5622 ( 0 1 6) 0 0.6645 0.5987 9 10 ( 5752 1s2d_A) ( 5397 1qo0_D) 0.4444 0.3333 3.3581 ( 0 1 6) 0 0.4444 0.3333 9 12 ( 5752 1s2d_A) ( 5470 1qvz_A) 0.6959 0.4316 4.6029 ( 1 9 21) 0 0.7037 0.4823 9 16 ( 5752 1s2d_A) ( 5673 1rli_A) 0.6664 0.4999 4.9548 ( 0 4 15) 0 0.6664 0.4999 9 12 ( 5752 1s2d_A) ( 5752 1s2d_A) 1.0000 1.0000 0.0000 ( 0 22 36) 0 1.0000 1.0000 9 9 ( 5752 1s2d_A) ( 5785 1say_A) 0.7510 0.4161 5.8303 ( 1 9 28) 0 0.8441 0.4564 9 19 ( 5752 1s2d_A) ( 5842 1sqs_A) 0.6451 0.5212 4.6838 ( 2 14 28) 0 0.8298 0.5640 9 14 ( 5752 1s2d_A) ( 5920 1tmy ) 0.4840 0.4531 4.1509 ( 1 6 10) 0 0.4840 0.4531 9 10 ( 5752 1s2d_A) ( 6242 1vhq_A) 0.6959 0.4887 4.6990 ( 1 9 21) 0 0.7187 0.4924 9 14 ( 5752 1s2d_A) ( 6258 1vi6_A) 0.7774 0.5384 4.3685 ( 0 9 21) 0 0.7774 0.5384 9 13 ( 5752 1s2d_A) ( 6283 1vjg_A) 0.4443 0.3333 6.8379 ( 0 3 6) 0 0.7507 0.6237 9 12 ( 5752 1s2d_A) ( 6496 2nac_A) 0.4444 0.3077 4.8081 ( 0 0 6) 0 0.7038 0.5704 9 13 ( 5752 1s2d_A) ( 6624 5nul ) 0.7768 0.6994 5.5376 ( 0 11 21) 0 0.7768 0.6994 9 10 ( 5752 1s2d_A) ( 6640 7req_A) 0.5555 0.4167 3.2470 ( 0 5 10) 0 0.5555 0.4167 9 12 ( 5752 1s2d_A) ( 6642 7req_B) 0.5554 0.3846 5.0293 ( 0 5 10) 0 0.5735 0.4574 9 13 -------------------------------------------------------------------------------------------------------------------------