------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5785 1say_A) ( 6 1a04_A) 0.5592 0.8097 4.8338 ( 3 28 55) 0 0.5729 0.9224 19 11 ( 5785 1say_A) ( 26 1a2o_A) 0.4848 0.6371 4.4871 ( 3 20 45) 0 0.4848 0.8994 19 10 ( 5785 1say_A) ( 90 1a9x_B) 0.2632 0.2778 3.6970 ( 0 2 10) 0 0.5262 0.5554 19 18 ( 5785 1say_A) ( 256 1b00_A) 0.5085 0.7645 5.3352 ( 2 17 45) 0 0.5118 0.8991 19 10 ( 5785 1say_A) ( 266 1b1c_A) 0.4696 0.7645 5.3566 ( 1 11 36) 0 0.5240 0.8757 19 11 ( 5785 1say_A) ( 428 1bmt_A) 0.5005 0.6917 5.0898 ( 3 23 45) 0 0.5751 0.9470 19 11 ( 5785 1say_A) ( 477 1bvy_F) 0.4716 0.9262 4.9245 ( 1 13 36) 0 0.4716 0.9262 19 9 ( 5785 1say_A) ( 523 1c4k_A) 0.3217 0.3957 4.4479 ( 1 4 21) 0 0.4210 0.9948 19 8 ( 5785 1say_A) ( 562 1ccw_A) 0.4716 0.8538 4.6849 ( 1 13 36) 0 0.5254 0.9784 19 10 ( 5785 1say_A) ( 745 1d4a_A) 0.5560 0.6681 7.0356 ( 3 27 55) 0 0.5560 0.6681 19 15 ( 5785 1say_A) ( 786 1dbw_A) 0.5085 0.7649 4.4856 ( 2 17 45) 0 0.5085 0.8986 19 10 ( 5785 1say_A) ( 793 1dcf_A) 0.4721 0.8647 4.0845 ( 1 14 36) 0 0.5143 0.8995 19 10 ( 5785 1say_A) ( 971 1dxy ) 0.4725 0.9557 2.8551 ( 1 15 36) 0 0.4725 0.9557 19 9 ( 5785 1say_A) ( 980 1dz3_A) 0.4210 0.7998 3.6264 ( 0 9 28) 0 0.4737 0.8994 19 10 ( 5785 1say_A) ( 1042 1e5d_A) 0.4516 0.6472 4.9335 ( 2 14 36) 0 0.4735 0.8962 19 10 ( 5785 1say_A) ( 1177 1eiw_A) 0.4736 0.9985 4.4264 ( 0 15 36) 0 0.4736 0.9985 19 9 ( 5785 1say_A) ( 1252 1es9_A) 0.4210 0.6665 4.2699 ( 0 12 28) 0 0.5660 0.8203 19 12 ( 5785 1say_A) ( 1253 1esc ) 0.4735 0.5290 7.0336 ( 0 14 36) 0 0.5201 0.5776 19 17 ( 5785 1say_A) ( 1266 1euc_B) 0.2632 0.4167 4.2164 ( 0 0 10) 0 0.5257 0.6497 19 12 ( 5785 1say_A) ( 1379 1f2v_A) 0.3158 0.3750 6.1762 ( 0 6 15) 0 0.4846 0.5412 19 16 ( 5785 1say_A) ( 1397 1f4p_A) 0.4736 0.9972 5.2286 ( 0 11 36) 0 0.4736 0.9972 19 9 ( 5785 1say_A) ( 1443 1f8y_A) 0.4516 0.6285 5.2818 ( 2 14 36) 0 0.5182 0.8117 19 11 ( 5785 1say_A) ( 1516 1fjg_B) 0.2631 0.4165 8.0079 ( 0 5 10) 0 0.3667 0.5673 19 12 ( 5785 1say_A) ( 1547 1flc_A) 0.3684 0.3889 4.0951 ( 0 7 21) 0 0.3684 0.3889 19 18 ( 5785 1say_A) ( 1659 1fye_A) 0.2632 0.2778 4.0901 ( 0 5 10) 0 0.5206 0.5481 19 18 ( 5785 1say_A) ( 1662 1fyx_A) 0.4199 0.7733 4.3637 ( 1 13 28) 0 0.4204 0.7842 19 10 ( 5785 1say_A) ( 1700 1g2i_A) 0.2632 0.3571 5.1806 ( 0 6 10) 0 0.5137 0.6633 19 14 ( 5785 1say_A) ( 1803 1gdh_A) 0.5263 0.9986 4.4190 ( 0 15 45) 0 0.5263 0.9986 19 10 ( 5785 1say_A) ( 1901 1gpm_A) 0.3157 0.3749 8.0369 ( 0 7 15) 0 0.5041 0.5773 19 16 ( 5785 1say_A) ( 2027 1h05_A) 0.4737 0.8180 3.1742 ( 0 10 36) 0 0.5242 0.8785 19 11 ( 5785 1say_A) ( 2427 1i7q_B) 0.3157 0.3333 7.6348 ( 0 6 15) 0 0.5145 0.5402 19 18 ( 5785 1say_A) ( 2470 1iex_A) 0.3146 0.4884 7.4330 ( 1 9 15) 0 0.5782 0.9090 19 12 ( 5785 1say_A) ( 2714 1j2y_A) 0.3684 0.6363 3.0638 ( 0 8 21) 0 0.5119 0.7784 19 11 ( 5785 1say_A) ( 2729 1j4a_A) 0.4848 0.6372 3.3809 ( 3 20 45) 0 0.4848 0.8861 19 10 ( 5785 1say_A) ( 2809 1jbe_A) 0.3722 0.3975 4.3046 ( 4 16 45) 0 0.5251 0.9712 19 10 ( 5785 1say_A) ( 3034 1jrl_A) 0.4210 0.7990 5.2939 ( 0 9 28) 0 0.4736 0.8986 19 10 ( 5785 1say_A) ( 3073 1jvn_A) 0.2632 0.2632 4.0117 ( 0 7 10) 0 0.5786 0.5786 19 19 ( 5785 1say_A) ( 3189 1k66_A) 0.4737 0.8180 3.2068 ( 0 12 36) 0 0.5253 0.8941 19 11 ( 5785 1say_A) ( 3190 1k68_A) 0.4985 0.7001 3.6459 ( 2 15 45) 0 0.5253 0.9766 19 10 ( 5785 1say_A) ( 3199 1k7c_A) 0.5145 0.6312 5.2482 ( 2 19 45) 0 0.5258 0.6651 19 15 ( 5785 1say_A) ( 3234 1k9v_F) 0.2632 0.2778 3.8519 ( 0 5 10) 0 0.5262 0.5554 19 18 ( 5785 1say_A) ( 3238 1ka9_H) 0.3146 0.3722 5.5967 ( 1 9 15) 0 0.5194 0.6092 19 16 ( 5785 1say_A) ( 3295 1kgs_A) 0.4910 0.6630 4.9433 ( 2 14 45) 0 0.5262 0.9981 19 10 ( 5785 1say_A) ( 3412 1krw_A) 0.4737 0.8998 3.0633 ( 0 13 36) 0 0.5249 0.9673 19 10 ( 5785 1say_A) ( 3462 1kwg_A) 0.2632 0.3125 3.0909 ( 0 5 10) 0 0.5493 0.6250 19 16 ( 5785 1say_A) ( 3560 1l7d_A) 0.7527 0.8220 2.5953 ( 6 70 105) 0 0.7695 0.8486 19 17 ( 5785 1say_A) ( 3581 1l9x_A) 0.2631 0.2174 7.3441 ( 0 7 10) 0 0.5172 0.4776 19 23 ( 5785 1say_A) ( 3632 1li4_A) 0.5042 0.5272 3.9163 ( 2 16 45) 0 0.5529 0.5779 19 18 ( 5785 1say_A) ( 3801 1m2e_A) 0.4210 0.8876 5.0162 ( 0 11 28) 0 0.4210 0.8884 19 9 ( 5785 1say_A) ( 3896 1mb3_A) 0.4685 0.5820 3.6672 ( 3 18 45) 0 0.5166 0.8997 19 10 ( 5785 1say_A) ( 4066 1mx3_A) 0.5494 0.7550 3.9469 ( 3 25 55) 0 0.5699 0.8918 19 11 ( 5785 1say_A) ( 4130 1n57_A) 0.2105 0.2222 4.0792 ( 0 2 6) 0 0.4307 0.4407 19 18 ( 5785 1say_A) ( 4185 1nat ) 0.4910 0.6633 3.3501 ( 2 14 45) 0 0.5262 0.9983 19 10 ( 5785 1say_A) ( 4323 1nni_1) 0.4724 0.8000 5.3404 ( 1 15 36) 0 0.5254 0.8948 19 11 ( 5785 1say_A) ( 4433 1ny5_A) 0.3396 0.3641 6.8259 ( 3 11 36) 0 0.4810 0.8939 19 10 ( 5785 1say_A) ( 4474 1o1y_A) 0.2632 0.2632 3.4129 ( 0 3 10) 0 0.5256 0.5256 19 19 ( 5785 1say_A) ( 4590 1obo_A) 0.4601 0.7079 5.7070 ( 2 16 36) 0 0.4734 0.8939 19 10 ( 5785 1say_A) ( 4669 1oi7_A) 0.3158 0.5454 4.0606 ( 0 3 15) 0 0.4725 0.8005 19 11 ( 5785 1say_A) ( 4787 1ou0_A) 0.3158 0.3529 4.8521 ( 0 7 15) 0 0.4600 0.5064 19 17 ( 5785 1say_A) ( 4813 1oxb_B) 0.4043 0.4455 4.2471 ( 4 18 45) 0 0.5253 0.9757 19 10 ( 5785 1say_A) ( 4871 1p2f_A) 0.4708 0.8398 3.9258 ( 1 12 36) 0 0.5245 0.9597 19 10 ( 5785 1say_A) ( 4905 1p5f_A) 0.4728 0.6386 3.9569 ( 1 16 36) 0 0.5905 0.7167 19 14 ( 5785 1say_A) ( 4916 1p6u_A) 0.2632 0.4999 4.7094 ( 0 4 10) 0 0.4708 0.8390 19 10 ( 5785 1say_A) ( 4926 1p80_A) 0.4083 0.5474 3.8607 ( 2 14 28) 0 0.4687 0.6621 19 13 ( 5785 1say_A) ( 5096 1psd_A) 0.4601 0.7339 4.3992 ( 1 8 36) 0 0.4601 0.7339 19 9 ( 5785 1say_A) ( 5234 1q7r_A) 0.2632 0.2778 3.1979 ( 0 2 10) 0 0.5004 0.5225 19 18 ( 5785 1say_A) ( 5289 1qcz_A) 0.4736 0.8975 5.7593 ( 0 11 36) 0 0.5233 0.9365 19 10 ( 5785 1say_A) ( 5297 1qdl_B) 0.3217 0.3411 3.8081 ( 2 8 21) 0 0.4737 0.5294 19 17 ( 5785 1say_A) ( 5364 1qkk_A) 0.4982 0.6983 7.3703 ( 2 15 45) 0 0.5248 0.9648 19 10 ( 5785 1say_A) ( 5397 1qo0_D) 0.4709 0.7240 10.9510 ( 1 14 36) 0 0.5153 0.7461 19 12 ( 5785 1say_A) ( 5470 1qvz_A) 0.2623 0.3104 12.8518 ( 1 8 10) 0 0.5252 0.6223 19 16 ( 5785 1say_A) ( 5673 1rli_A) 0.5564 0.7629 5.3131 ( 3 27 55) 0 0.5564 0.8271 19 12 ( 5785 1say_A) ( 5752 1s2d_A) 0.4516 0.6629 5.5183 ( 2 14 36) 0 0.4564 0.8441 19 9 ( 5785 1say_A) ( 5785 1say_A) 1.0000 1.0000 0.0000 ( 0 129 171) 0 1.0000 1.0000 19 19 ( 5785 1say_A) ( 5842 1sqs_A) 0.5262 0.7137 5.4367 ( 0 19 45) 0 0.5262 0.7137 19 14 ( 5785 1say_A) ( 5920 1tmy ) 0.4685 0.5819 3.8083 ( 3 18 45) 0 0.5247 0.9626 19 10 ( 5785 1say_A) ( 6242 1vhq_A) 0.2632 0.3571 5.3354 ( 0 6 10) 0 0.5365 0.7129 19 14 ( 5785 1say_A) ( 6258 1vi6_A) 0.3158 0.4614 5.8637 ( 0 7 15) 0 0.4716 0.6788 19 13 ( 5785 1say_A) ( 6283 1vjg_A) 0.3158 0.5000 4.3864 ( 0 5 15) 0 0.5182 0.7654 19 12 ( 5785 1say_A) ( 6496 2nac_A) 0.6199 0.8558 4.2642 ( 2 24 66) 0 0.6578 0.8658 19 13 ( 5785 1say_A) ( 6624 5nul ) 0.5262 0.9967 5.4358 ( 0 21 45) 0 0.5262 0.9967 19 10 ( 5785 1say_A) ( 6640 7req_A) 0.4721 0.7349 4.7487 ( 1 14 36) 0 0.5737 0.8701 19 12 ( 5785 1say_A) ( 6642 7req_B) 0.3050 0.3121 4.9656 ( 7 22 45) 0 0.5196 0.7290 19 13 -------------------------------------------------------------------------------------------------------------------------