------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5842 1sqs_A) ( 6 1a04_A) 0.7169 0.8248 5.6758 ( 3 29 55) 0 0.7169 0.9023 14 11 ( 5842 1sqs_A) ( 26 1a2o_A) 0.6375 0.8726 7.5008 ( 1 16 36) 0 0.6375 0.8726 14 10 ( 5842 1sqs_A) ( 90 1a9x_B) 0.5620 0.4719 4.4143 ( 2 14 36) 0 0.6394 0.4990 14 18 ( 5842 1sqs_A) ( 256 1b00_A) 0.6372 0.8713 5.4206 ( 1 15 36) 0 0.6426 0.8989 14 10 ( 5842 1sqs_A) ( 266 1b1c_A) 0.7086 0.8907 6.6279 ( 1 18 45) 0 0.7086 0.8907 14 11 ( 5842 1sqs_A) ( 428 1bmt_A) 0.5943 0.6489 5.0481 ( 3 21 45) 0 0.6425 0.8170 14 11 ( 5842 1sqs_A) ( 477 1bvy_F) 0.6375 0.9556 3.2535 ( 1 15 36) 0 0.6375 0.9556 14 9 ( 5842 1sqs_A) ( 523 1c4k_A) 0.5211 0.6627 6.0561 ( 1 7 28) 0 0.5211 0.8723 14 8 ( 5842 1sqs_A) ( 562 1ccw_A) 0.5890 0.7081 5.2797 ( 2 16 36) 0 0.5890 0.7948 14 10 ( 5842 1sqs_A) ( 745 1d4a_A) 0.7668 0.7197 4.9202 ( 2 28 55) 0 0.7668 0.7197 14 15 ( 5842 1sqs_A) ( 786 1dbw_A) 0.5972 0.7295 8.7768 ( 2 17 36) 0 0.6426 0.8988 14 10 ( 5842 1sqs_A) ( 793 1dcf_A) 0.6374 0.8723 4.2915 ( 1 15 36) 0 0.6374 0.8723 14 10 ( 5842 1sqs_A) ( 971 1dxy ) 0.4887 0.6959 4.7981 ( 1 9 21) 0 0.6291 0.8992 14 9 ( 5842 1sqs_A) ( 980 1dz3_A) 0.5213 0.6237 3.2562 ( 2 14 28) 0 0.5713 0.7996 14 10 ( 5842 1sqs_A) ( 1042 1e5d_A) 0.6358 0.8648 3.9392 ( 1 14 36) 0 0.6414 0.8924 14 10 ( 5842 1sqs_A) ( 1177 1eiw_A) 0.6333 0.9260 5.0338 ( 1 13 36) 0 0.6333 0.9260 14 9 ( 5842 1sqs_A) ( 1252 1es9_A) 0.4285 0.4999 5.0388 ( 0 4 15) 0 0.7091 0.8224 14 12 ( 5842 1sqs_A) ( 1253 1esc ) 0.6343 0.5261 8.0138 ( 1 14 36) 0 0.6367 0.5271 14 17 ( 5842 1sqs_A) ( 1266 1euc_B) 0.6567 0.7256 5.1381 ( 2 18 45) 0 0.6567 0.7495 14 12 ( 5842 1sqs_A) ( 1379 1f2v_A) 0.6452 0.5859 5.5074 ( 2 17 45) 0 0.7115 0.6236 14 16 ( 5842 1sqs_A) ( 1397 1f4p_A) 0.6375 0.9555 3.5201 ( 1 15 36) 0 0.6375 0.9555 14 9 ( 5842 1sqs_A) ( 1443 1f8y_A) 0.5613 0.6957 5.2441 ( 1 11 28) 0 0.5768 0.6957 14 11 ( 5842 1sqs_A) ( 1516 1fjg_B) 0.4999 0.5832 4.7624 ( 0 4 21) 0 0.5660 0.6551 14 12 ( 5842 1sqs_A) ( 1547 1flc_A) 0.4999 0.3889 5.7395 ( 0 6 21) 0 0.5710 0.4443 14 18 ( 5842 1sqs_A) ( 1659 1fye_A) 0.4717 0.3801 6.7492 ( 1 7 21) 0 0.6896 0.5974 14 18 ( 5842 1sqs_A) ( 1662 1fyx_A) 0.5390 0.6716 6.7391 ( 2 16 28) 0 0.5390 0.6995 14 10 ( 5842 1sqs_A) ( 1700 1g2i_A) 0.4962 0.4962 4.9858 ( 1 12 21) 0 0.6408 0.6408 14 14 ( 5842 1sqs_A) ( 1803 1gdh_A) 0.6931 0.9049 4.9605 ( 1 12 45) 0 0.6931 0.9049 14 10 ( 5842 1sqs_A) ( 1901 1gpm_A) 0.5000 0.4375 4.0945 ( 0 8 21) 0 0.6077 0.5617 14 16 ( 5842 1sqs_A) ( 2027 1h05_A) 0.6427 0.8177 4.4070 ( 0 8 36) 0 0.7131 0.9053 14 11 ( 5842 1sqs_A) ( 2427 1i7q_B) 0.6082 0.5173 4.7335 ( 3 22 45) 0 0.6082 0.5173 14 18 ( 5842 1sqs_A) ( 2470 1iex_A) 0.7129 0.8304 6.6461 ( 0 12 45) 0 0.7129 0.8304 14 12 ( 5842 1sqs_A) ( 2714 1j2y_A) 0.6426 0.8172 5.1283 ( 0 10 36) 0 0.6654 0.8172 14 11 ( 5842 1sqs_A) ( 2729 1j4a_A) 0.5619 0.6472 5.0342 ( 2 14 36) 0 0.6299 0.8386 14 10 ( 5842 1sqs_A) ( 2809 1jbe_A) 0.6357 0.8643 4.6581 ( 1 14 36) 0 0.6407 0.8887 14 10 ( 5842 1sqs_A) ( 3034 1jrl_A) 0.5711 0.7983 6.0616 ( 0 8 28) 0 0.5712 0.7987 14 10 ( 5842 1sqs_A) ( 3073 1jvn_A) 0.6369 0.4724 6.4106 ( 1 15 36) 0 0.7114 0.5257 14 19 ( 5842 1sqs_A) ( 3189 1k66_A) 0.5213 0.5470 4.4351 ( 3 17 45) 0 0.6334 0.7883 14 11 ( 5842 1sqs_A) ( 3190 1k68_A) 0.5213 0.5529 4.4041 ( 3 17 45) 0 0.6422 0.8967 14 10 ( 5842 1sqs_A) ( 3199 1k7c_A) 0.6297 0.5906 6.1411 ( 1 12 36) 0 0.6297 0.5906 14 15 ( 5842 1sqs_A) ( 3234 1k9v_F) 0.4710 0.4067 4.4856 ( 2 11 28) 0 0.6403 0.4993 14 18 ( 5842 1sqs_A) ( 3238 1ka9_H) 0.5642 0.4962 4.7321 ( 1 12 28) 0 0.5642 0.4962 14 16 ( 5842 1sqs_A) ( 3295 1kgs_A) 0.4710 0.5229 4.0623 ( 2 11 28) 0 0.6427 0.8990 14 10 ( 5842 1sqs_A) ( 3412 1krw_A) 0.6334 0.8538 4.7169 ( 1 13 36) 0 0.7127 0.9917 14 10 ( 5842 1sqs_A) ( 3462 1kwg_A) 0.6426 0.5623 5.1913 ( 0 13 36) 0 0.6426 0.5623 14 16 ( 5842 1sqs_A) ( 3560 1l7d_A) 0.6333 0.5257 5.2939 ( 1 13 36) 0 0.7108 0.5869 14 17 ( 5842 1sqs_A) ( 3581 1l9x_A) 0.5495 0.3804 7.5149 ( 3 20 36) 0 0.6893 0.4466 14 23 ( 5842 1sqs_A) ( 3632 1li4_A) 0.6373 0.4984 5.0000 ( 1 15 36) 0 0.6929 0.5766 14 18 ( 5842 1sqs_A) ( 3801 1m2e_A) 0.3790 0.3960 3.6652 ( 3 12 28) 0 0.6332 0.9248 14 9 ( 5842 1sqs_A) ( 3896 1mb3_A) 0.7081 0.9688 7.1580 ( 1 18 45) 0 0.7081 0.9688 14 10 ( 5842 1sqs_A) ( 4066 1mx3_A) 0.6738 0.7973 5.0547 ( 2 20 45) 0 0.6738 0.8174 14 11 ( 5842 1sqs_A) ( 4130 1n57_A) 0.6424 0.4999 5.7015 ( 0 14 36) 0 0.6424 0.5370 14 18 ( 5842 1sqs_A) ( 4185 1nat ) 0.6973 0.9212 7.0878 ( 1 13 45) 0 0.6973 0.9212 14 10 ( 5842 1sqs_A) ( 4323 1nni_1) 0.6933 0.8463 3.8053 ( 2 24 45) 0 0.6933 0.8463 14 11 ( 5842 1sqs_A) ( 4433 1ny5_A) 0.6329 0.8517 6.4243 ( 1 13 36) 0 0.6422 0.8964 14 10 ( 5842 1sqs_A) ( 4474 1o1y_A) 0.5614 0.4188 4.6935 ( 1 11 28) 0 0.5614 0.4197 14 19 ( 5842 1sqs_A) ( 4590 1obo_A) 0.6083 0.6881 3.7233 ( 3 22 45) 0 0.6333 0.8534 14 10 ( 5842 1sqs_A) ( 4669 1oi7_A) 0.5620 0.6287 4.4227 ( 2 14 36) 0 0.5620 0.6954 14 11 ( 5842 1sqs_A) ( 4787 1ou0_A) 0.4285 0.3529 5.1895 ( 0 1 15) 0 0.6848 0.5764 14 17 ( 5842 1sqs_A) ( 4813 1oxb_B) 0.5891 0.7084 4.1144 ( 2 16 36) 0 0.6357 0.8643 14 10 ( 5842 1sqs_A) ( 4871 1p2f_A) 0.6358 0.8646 4.2298 ( 1 14 36) 0 0.6358 0.8646 14 10 ( 5842 1sqs_A) ( 4905 1p5f_A) 0.7119 0.7119 4.8090 ( 1 22 45) 0 0.7119 0.7119 14 14 ( 5842 1sqs_A) ( 4916 1p6u_A) 0.5082 0.5937 4.7391 ( 2 13 28) 0 0.5713 0.7994 14 10 ( 5842 1sqs_A) ( 4926 1p80_A) 0.6403 0.6886 5.8522 ( 1 19 36) 0 0.6836 0.7113 14 13 ( 5842 1sqs_A) ( 5096 1psd_A) 0.3571 0.5554 5.6052 ( 0 2 10) 0 0.4999 0.7772 14 9 ( 5842 1sqs_A) ( 5234 1q7r_A) 0.5987 0.4860 5.5320 ( 2 17 36) 0 0.6397 0.4991 14 18 ( 5842 1sqs_A) ( 5289 1qcz_A) 0.5890 0.7082 5.1458 ( 2 16 36) 0 0.5890 0.7997 14 10 ( 5842 1sqs_A) ( 5297 1qdl_B) 0.5620 0.4932 4.5893 ( 2 14 36) 0 0.6326 0.5254 14 17 ( 5842 1sqs_A) ( 5364 1qkk_A) 0.6364 0.8676 7.3075 ( 1 15 36) 0 0.6364 0.8676 14 10 ( 5842 1sqs_A) ( 5397 1qo0_D) 0.6384 0.7405 10.2012 ( 0 12 36) 0 0.6384 0.7405 14 12 ( 5842 1sqs_A) ( 5470 1qvz_A) 0.6385 0.5603 4.8435 ( 1 16 36) 0 0.6929 0.6137 14 16 ( 5842 1sqs_A) ( 5673 1rli_A) 0.6934 0.7908 2.8823 ( 2 24 45) 0 0.6934 0.7908 14 12 ( 5842 1sqs_A) ( 5752 1s2d_A) 0.5212 0.6451 4.6838 ( 2 14 28) 0 0.5640 0.8298 14 9 ( 5842 1sqs_A) ( 5785 1say_A) 0.7137 0.5262 5.4367 ( 0 19 45) 0 0.7137 0.5262 14 19 ( 5842 1sqs_A) ( 5842 1sqs_A) 1.0000 1.0000 0.0000 ( 0 62 91) 0 1.0000 1.0000 14 14 ( 5842 1sqs_A) ( 5920 1tmy ) 0.6374 0.8725 4.0416 ( 1 15 36) 0 0.6374 0.8725 14 10 ( 5842 1sqs_A) ( 6242 1vhq_A) 0.6425 0.6425 5.2881 ( 0 15 36) 0 0.6425 0.6425 14 14 ( 5842 1sqs_A) ( 6258 1vi6_A) 0.5502 0.5856 4.6925 ( 1 9 28) 0 0.5890 0.6191 14 13 ( 5842 1sqs_A) ( 6283 1vjg_A) 0.5708 0.6653 7.2847 ( 0 10 28) 0 0.6296 0.7224 14 12 ( 5842 1sqs_A) ( 6496 2nac_A) 0.6425 0.6918 5.4898 ( 0 10 36) 0 0.7123 0.7663 14 13 ( 5842 1sqs_A) ( 6624 5nul ) 0.7127 0.9918 3.8946 ( 1 24 45) 0 0.7127 0.9918 14 10 ( 5842 1sqs_A) ( 6640 7req_A) 0.6357 0.7349 4.6920 ( 1 14 36) 0 0.6357 0.7349 14 12 ( 5842 1sqs_A) ( 6642 7req_B) 0.5211 0.5471 6.1009 ( 2 14 28) 0 0.6062 0.6416 14 13 -------------------------------------------------------------------------------------------------------------------------