------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5920 1tmy ) ( 6 1a04_A) 0.9999 0.9090 2.0672 ( 0 24 45) 0 0.9999 0.9090 10 11 ( 5920 1tmy ) ( 26 1a2o_A) 0.9999 0.9999 1.9499 ( 0 27 45) 0 0.9999 0.9999 10 10 ( 5920 1tmy ) ( 90 1a9x_B) 0.9995 0.5555 3.4523 ( 0 21 45) 0 0.9995 0.5555 10 18 ( 5920 1tmy ) ( 256 1b00_A) 0.9998 0.9998 2.7060 ( 0 25 45) 0 0.9998 0.9998 10 10 ( 5920 1tmy ) ( 266 1b1c_A) 0.8992 0.8177 4.2752 ( 0 14 36) 0 0.9972 0.9073 10 11 ( 5920 1tmy ) ( 428 1bmt_A) 0.9995 0.9088 3.3107 ( 0 23 45) 0 0.9995 0.9088 10 11 ( 5920 1tmy ) ( 477 1bvy_F) 0.7999 0.8887 3.2358 ( 0 14 28) 0 0.7999 0.8887 10 9 ( 5920 1tmy ) ( 523 1c4k_A) 0.7996 0.9987 4.2713 ( 0 12 28) 0 0.7996 0.9987 10 8 ( 5920 1tmy ) ( 562 1ccw_A) 0.8998 0.8998 2.9300 ( 0 16 36) 0 0.8998 0.8998 10 10 ( 5920 1tmy ) ( 745 1d4a_A) 0.8989 0.5998 4.7548 ( 0 17 36) 0 0.9826 0.6643 10 15 ( 5920 1tmy ) ( 786 1dbw_A) 0.9912 0.9912 1.8702 ( 1 23 45) 0 0.9937 0.9937 10 10 ( 5920 1tmy ) ( 793 1dcf_A) 0.9999 0.9999 1.4168 ( 0 25 45) 0 0.9999 0.9999 10 10 ( 5920 1tmy ) ( 971 1dxy ) 0.8998 0.9996 3.2271 ( 0 14 36) 0 0.8998 0.9996 10 9 ( 5920 1tmy ) ( 980 1dz3_A) 0.9000 0.9000 1.6497 ( 0 18 36) 0 0.9000 0.9000 10 10 ( 5920 1tmy ) ( 1042 1e5d_A) 0.8181 0.8181 4.0894 ( 2 19 45) 0 0.9891 0.9891 10 10 ( 5920 1tmy ) ( 1177 1eiw_A) 0.7763 0.8184 3.1456 ( 2 19 36) 0 0.7763 0.8184 10 9 ( 5920 1tmy ) ( 1252 1es9_A) 0.9890 0.8288 5.0188 ( 1 23 45) 0 0.9890 0.8288 10 12 ( 5920 1tmy ) ( 1253 1esc ) 0.9910 0.5876 7.0176 ( 0 24 45) 0 0.9910 0.5876 10 17 ( 5920 1tmy ) ( 1266 1euc_B) 0.9997 0.8332 3.0773 ( 0 20 45) 0 0.9997 0.8332 10 12 ( 5920 1tmy ) ( 1379 1f2v_A) 0.9713 0.6221 3.9760 ( 1 17 45) 0 0.9713 0.6221 10 16 ( 5920 1tmy ) ( 1397 1f4p_A) 0.7998 0.8886 3.4906 ( 0 14 28) 0 0.8725 0.9551 10 9 ( 5920 1tmy ) ( 1443 1f8y_A) 0.4000 0.3636 3.0827 ( 0 3 6) 0 0.5045 0.4789 10 11 ( 5920 1tmy ) ( 1516 1fjg_B) 0.4719 0.4488 4.2849 ( 1 5 21) 0 0.5064 0.4748 10 12 ( 5920 1tmy ) ( 1547 1flc_A) 0.7995 0.4444 4.4012 ( 0 10 28) 0 0.7995 0.4444 10 18 ( 5920 1tmy ) ( 1659 1fye_A) 0.5996 0.3333 6.2059 ( 0 9 15) 0 0.9878 0.5549 10 18 ( 5920 1tmy ) ( 1662 1fyx_A) 0.7734 0.7734 3.8120 ( 1 13 28) 0 0.7734 0.7734 10 10 ( 5920 1tmy ) ( 1700 1g2i_A) 0.8855 0.6401 4.5850 ( 1 18 36) 0 0.8860 0.6402 10 14 ( 5920 1tmy ) ( 1803 1gdh_A) 0.9548 0.9548 4.3984 ( 1 15 45) 0 0.9548 0.9548 10 10 ( 5920 1tmy ) ( 1901 1gpm_A) 0.7999 0.5000 2.5155 ( 0 14 28) 0 0.7999 0.5000 10 16 ( 5920 1tmy ) ( 2027 1h05_A) 0.8999 0.8181 2.6704 ( 0 10 36) 0 0.8999 0.8181 10 11 ( 5920 1tmy ) ( 2427 1i7q_B) 0.5930 0.4229 7.3099 ( 2 13 28) 0 0.6473 0.4531 10 18 ( 5920 1tmy ) ( 2470 1iex_A) 0.9995 0.8331 3.4619 ( 0 16 45) 0 0.9995 0.8331 10 12 ( 5920 1tmy ) ( 2714 1j2y_A) 0.8996 0.8180 3.5436 ( 0 15 36) 0 0.8996 0.8180 10 11 ( 5920 1tmy ) ( 2729 1j4a_A) 0.9991 0.9991 3.9038 ( 0 19 45) 0 0.9991 0.9991 10 10 ( 5920 1tmy ) ( 2809 1jbe_A) 0.9999 0.9999 1.7665 ( 0 22 45) 0 0.9999 0.9999 10 10 ( 5920 1tmy ) ( 3034 1jrl_A) 0.8987 0.8987 4.9191 ( 0 13 36) 0 0.8987 0.8987 10 10 ( 5920 1tmy ) ( 3073 1jvn_A) 0.8993 0.4737 4.2043 ( 0 20 36) 0 0.8993 0.4737 10 19 ( 5920 1tmy ) ( 3189 1k66_A) 0.9999 0.9090 2.3923 ( 0 21 45) 0 0.9999 0.9090 10 11 ( 5920 1tmy ) ( 3190 1k68_A) 0.9999 0.9999 2.1657 ( 0 21 45) 0 0.9999 0.9999 10 10 ( 5920 1tmy ) ( 3199 1k7c_A) 0.8992 0.5999 4.3184 ( 0 18 36) 0 0.8992 0.5999 10 15 ( 5920 1tmy ) ( 3234 1k9v_F) 0.8991 0.5000 4.5189 ( 0 20 36) 0 0.8991 0.5000 10 18 ( 5920 1tmy ) ( 3238 1ka9_H) 0.7992 0.4999 4.9642 ( 0 16 28) 0 0.7992 0.5077 10 16 ( 5920 1tmy ) ( 3295 1kgs_A) 0.8730 0.8730 1.6622 ( 1 15 36) 0 0.8982 0.8982 10 10 ( 5920 1tmy ) ( 3412 1krw_A) 0.9997 0.9997 3.0107 ( 0 18 45) 0 0.9997 0.9997 10 10 ( 5920 1tmy ) ( 3462 1kwg_A) 0.8998 0.5625 2.9999 ( 0 15 36) 0 0.8998 0.5625 10 16 ( 5920 1tmy ) ( 3560 1l7d_A) 0.8640 0.5266 5.0680 ( 1 14 36) 0 0.9977 0.5881 10 17 ( 5920 1tmy ) ( 3581 1l9x_A) 0.7757 0.3885 4.9959 ( 2 19 36) 0 0.7927 0.4242 10 23 ( 5920 1tmy ) ( 3632 1li4_A) 0.9987 0.5555 4.2805 ( 0 20 45) 0 0.9989 0.5555 10 18 ( 5920 1tmy ) ( 3801 1m2e_A) 0.8998 0.9997 3.0047 ( 0 21 36) 0 0.8998 0.9997 10 9 ( 5920 1tmy ) ( 3896 1mb3_A) 0.9999 0.9999 1.1454 ( 0 24 45) 0 0.9999 0.9999 10 10 ( 5920 1tmy ) ( 4066 1mx3_A) 0.8989 0.8175 4.6653 ( 0 12 36) 0 0.8989 0.8175 10 11 ( 5920 1tmy ) ( 4130 1n57_A) 0.6371 0.5035 4.4081 ( 3 20 45) 0 0.7985 0.5035 10 18 ( 5920 1tmy ) ( 4185 1nat ) 0.9999 0.9999 1.4312 ( 0 19 45) 0 0.9999 0.9999 10 10 ( 5920 1tmy ) ( 4323 1nni_1) 0.9055 0.8461 4.2615 ( 2 24 45) 0 0.9055 0.8461 10 11 ( 5920 1tmy ) ( 4433 1ny5_A) 0.9975 0.9975 5.0770 ( 0 20 45) 0 0.9975 0.9975 10 10 ( 5920 1tmy ) ( 4474 1o1y_A) 0.4996 0.2631 7.4301 ( 0 5 10) 0 0.5043 0.3708 10 19 ( 5920 1tmy ) ( 4590 1obo_A) 0.8996 0.8996 3.6935 ( 0 19 36) 0 0.8996 0.8996 10 10 ( 5920 1tmy ) ( 4669 1oi7_A) 0.8999 0.8181 2.3272 ( 0 14 36) 0 0.8999 0.8181 10 11 ( 5920 1tmy ) ( 4787 1ou0_A) 0.9766 0.5865 4.0190 ( 1 18 45) 0 0.9766 0.5865 10 17 ( 5920 1tmy ) ( 4813 1oxb_B) 0.9999 0.9999 1.3096 ( 0 24 45) 0 0.9999 0.9999 10 10 ( 5920 1tmy ) ( 4871 1p2f_A) 0.9999 0.9999 2.0234 ( 0 20 45) 0 0.9999 0.9999 10 10 ( 5920 1tmy ) ( 4905 1p5f_A) 0.5385 0.4147 4.7839 ( 1 7 15) 0 0.6098 0.5613 10 14 ( 5920 1tmy ) ( 4916 1p6u_A) 0.8999 0.8999 2.5114 ( 0 17 36) 0 0.8999 0.8999 10 10 ( 5920 1tmy ) ( 4926 1p80_A) 0.6000 0.4615 2.5188 ( 0 7 15) 0 0.7789 0.6095 10 13 ( 5920 1tmy ) ( 5096 1psd_A) 0.8990 0.9982 4.6368 ( 0 5 36) 0 0.8990 0.9982 10 9 ( 5920 1tmy ) ( 5234 1q7r_A) 0.8991 0.5000 4.4543 ( 0 19 36) 0 0.8991 0.5000 10 18 ( 5920 1tmy ) ( 5289 1qcz_A) 0.8997 0.8997 3.4177 ( 0 15 36) 0 0.8997 0.8997 10 10 ( 5920 1tmy ) ( 5297 1qdl_B) 0.8999 0.5294 2.7868 ( 0 15 36) 0 0.8999 0.5294 10 17 ( 5920 1tmy ) ( 5364 1qkk_A) 0.9957 0.9957 5.8153 ( 0 22 45) 0 0.9957 0.9957 10 10 ( 5920 1tmy ) ( 5397 1qo0_D) 0.8822 0.7427 9.5468 ( 0 17 36) 0 0.8822 0.7427 10 12 ( 5920 1tmy ) ( 5470 1qvz_A) 0.8990 0.5624 4.6389 ( 0 17 36) 0 0.8990 0.5624 10 16 ( 5920 1tmy ) ( 5673 1rli_A) 0.8826 0.7428 4.0274 ( 1 17 36) 0 0.8826 0.7662 10 12 ( 5920 1tmy ) ( 5752 1s2d_A) 0.4531 0.4840 4.1509 ( 1 6 10) 0 0.4531 0.4840 10 9 ( 5920 1tmy ) ( 5785 1say_A) 0.5819 0.4685 3.8083 ( 3 18 45) 0 0.9626 0.5247 10 19 ( 5920 1tmy ) ( 5842 1sqs_A) 0.8725 0.6374 4.0416 ( 1 15 36) 0 0.8725 0.6374 10 14 ( 5920 1tmy ) ( 5920 1tmy ) 1.0000 1.0000 0.0000 ( 0 27 45) 0 1.0000 1.0000 10 10 ( 5920 1tmy ) ( 6242 1vhq_A) 0.8828 0.6395 3.6028 ( 1 17 36) 0 0.8828 0.6395 10 14 ( 5920 1tmy ) ( 6258 1vi6_A) 0.5073 0.4575 2.6523 ( 2 11 21) 0 0.7081 0.5855 10 13 ( 5920 1tmy ) ( 6283 1vjg_A) 0.8985 0.7494 5.0782 ( 0 14 36) 0 0.8985 0.7494 10 12 ( 5920 1tmy ) ( 6496 2nac_A) 0.9988 0.7689 4.2093 ( 0 16 45) 0 0.9988 0.7689 10 13 ( 5920 1tmy ) ( 6624 5nul ) 0.7997 0.7997 3.8190 ( 0 14 28) 0 0.8979 0.8979 10 10 ( 5920 1tmy ) ( 6640 7req_A) 0.9998 0.8333 2.5585 ( 0 24 45) 0 0.9998 0.8333 10 12 ( 5920 1tmy ) ( 6642 7req_B) 0.9994 0.7691 3.5835 ( 0 20 45) 0 0.9994 0.7691 10 13 -------------------------------------------------------------------------------------------------------------------------