------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6258 1vi6_A) ( 6 1a04_A) 0.3846 0.4545 3.7358 ( 0 4 10) 0 0.4861 0.5123 13 11 ( 6258 1vi6_A) ( 26 1a2o_A) 0.4575 0.5073 2.9810 ( 2 11 21) 0 0.6010 0.7516 13 10 ( 6258 1vi6_A) ( 90 1a9x_B) 0.4615 0.3333 4.1926 ( 0 5 15) 0 0.5380 0.4534 13 18 ( 6258 1vi6_A) ( 256 1b00_A) 0.3295 0.3670 8.1836 ( 1 4 10) 0 0.5950 0.7338 13 10 ( 6258 1vi6_A) ( 266 1b1c_A) 0.6153 0.7270 4.4483 ( 0 10 28) 0 0.6153 0.7270 13 11 ( 6258 1vi6_A) ( 428 1bmt_A) 0.5384 0.6363 3.5651 ( 0 8 21) 0 0.5856 0.6652 13 11 ( 6258 1vi6_A) ( 477 1bvy_F) 0.6153 0.8883 4.1635 ( 0 12 28) 0 0.6153 0.8883 13 9 ( 6258 1vi6_A) ( 523 1c4k_A) 0.4615 0.7494 5.1555 ( 0 4 15) 0 0.4615 0.7495 13 8 ( 6258 1vi6_A) ( 562 1ccw_A) 0.4612 0.5987 8.1314 ( 0 6 15) 0 0.5309 0.5987 13 10 ( 6258 1vi6_A) ( 745 1d4a_A) 0.3077 0.2667 5.2165 ( 0 3 6) 0 0.5277 0.4613 13 15 ( 6258 1vi6_A) ( 786 1dbw_A) 0.3846 0.5000 2.5595 ( 0 5 10) 0 0.6077 0.7729 13 10 ( 6258 1vi6_A) ( 793 1dcf_A) 0.3846 0.5000 3.2409 ( 0 4 10) 0 0.4345 0.5000 13 10 ( 6258 1vi6_A) ( 971 1dxy ) 0.5384 0.7776 3.4926 ( 0 9 21) 0 0.5384 0.7777 13 9 ( 6258 1vi6_A) ( 980 1dz3_A) 0.4615 0.6000 2.6945 ( 0 7 15) 0 0.5384 0.6999 13 10 ( 6258 1vi6_A) ( 1042 1e5d_A) 0.6152 0.7993 4.8353 ( 0 10 28) 0 0.6152 0.7993 13 10 ( 6258 1vi6_A) ( 1177 1eiw_A) 0.3846 0.5555 4.6173 ( 0 3 10) 0 0.5708 0.7770 13 9 ( 6258 1vi6_A) ( 1252 1es9_A) 0.4861 0.5000 4.1368 ( 2 11 28) 0 0.5856 0.6241 13 12 ( 6258 1vi6_A) ( 1253 1esc ) 0.5384 0.4118 3.6832 ( 0 8 21) 0 0.5384 0.4118 13 17 ( 6258 1vi6_A) ( 1266 1euc_B) 0.4567 0.4668 4.4101 ( 2 10 28) 0 0.6921 0.7497 13 12 ( 6258 1vi6_A) ( 1379 1f2v_A) 0.6628 0.5514 4.4460 ( 2 21 36) 0 0.6921 0.5702 13 16 ( 6258 1vi6_A) ( 1397 1f4p_A) 0.6153 0.8882 4.2100 ( 0 9 28) 0 0.6153 0.8882 13 9 ( 6258 1vi6_A) ( 1443 1f8y_A) 0.3846 0.4545 4.9738 ( 0 5 10) 0 0.5225 0.6018 13 11 ( 6258 1vi6_A) ( 1516 1fjg_B) 0.6923 0.7500 2.0849 ( 0 22 36) 0 0.6923 0.7500 13 12 ( 6258 1vi6_A) ( 1547 1flc_A) 0.5384 0.3889 3.6625 ( 0 6 21) 0 0.5384 0.3935 13 18 ( 6258 1vi6_A) ( 1659 1fye_A) 0.3077 0.2222 3.9187 ( 0 3 6) 0 0.6874 0.4990 13 18 ( 6258 1vi6_A) ( 1662 1fyx_A) 0.3846 0.5000 2.8782 ( 0 5 10) 0 0.5368 0.6040 13 10 ( 6258 1vi6_A) ( 1700 1g2i_A) 0.4861 0.4710 4.5852 ( 2 11 28) 0 0.4861 0.4710 13 14 ( 6258 1vi6_A) ( 1803 1gdh_A) 0.5384 0.6999 3.8911 ( 0 6 21) 0 0.6669 0.8187 13 10 ( 6258 1vi6_A) ( 1901 1gpm_A) 0.6078 0.4973 3.9927 ( 1 13 28) 0 0.6078 0.5076 13 16 ( 6258 1vi6_A) ( 2027 1h05_A) 0.3846 0.4545 2.7551 ( 0 2 10) 0 0.6153 0.7271 13 11 ( 6258 1vi6_A) ( 2427 1i7q_B) 0.6153 0.4444 3.8285 ( 0 12 28) 0 0.6788 0.4973 13 18 ( 6258 1vi6_A) ( 2470 1iex_A) 0.5950 0.6372 4.0920 ( 1 10 28) 0 0.5950 0.6372 13 12 ( 6258 1vi6_A) ( 2714 1j2y_A) 0.3846 0.4545 3.5469 ( 0 5 10) 0 0.6152 0.7269 13 11 ( 6258 1vi6_A) ( 2729 1j4a_A) 0.4861 0.5229 4.1392 ( 2 11 28) 0 0.6000 0.7485 13 10 ( 6258 1vi6_A) ( 2809 1jbe_A) 0.4351 0.4719 2.5539 ( 2 10 21) 0 0.5276 0.6629 13 10 ( 6258 1vi6_A) ( 3034 1jrl_A) 0.5139 0.6236 4.4806 ( 1 8 21) 0 0.6007 0.7507 13 10 ( 6258 1vi6_A) ( 3073 1jvn_A) 0.3846 0.2632 4.4645 ( 0 5 10) 0 0.6920 0.4736 13 19 ( 6258 1vi6_A) ( 3189 1k66_A) 0.4861 0.5124 3.2348 ( 2 11 28) 0 0.6674 0.7650 13 11 ( 6258 1vi6_A) ( 3190 1k68_A) 0.3846 0.5000 2.7982 ( 0 5 10) 0 0.6673 0.8199 13 10 ( 6258 1vi6_A) ( 3199 1k7c_A) 0.4614 0.3999 6.1416 ( 0 3 15) 0 0.6150 0.5332 13 15 ( 6258 1vi6_A) ( 3234 1k9v_F) 0.3846 0.2778 3.3891 ( 0 4 10) 0 0.6674 0.5110 13 18 ( 6258 1vi6_A) ( 3238 1ka9_H) 0.3846 0.3125 3.2621 ( 0 5 10) 0 0.6821 0.5588 13 16 ( 6258 1vi6_A) ( 3295 1kgs_A) 0.4615 0.5999 4.4670 ( 0 3 15) 0 0.6153 0.7996 13 10 ( 6258 1vi6_A) ( 3412 1krw_A) 0.3845 0.4996 7.7735 ( 0 1 10) 0 0.6153 0.7997 13 10 ( 6258 1vi6_A) ( 3462 1kwg_A) 0.3077 0.2500 4.0921 ( 0 1 6) 0 0.6051 0.4963 13 16 ( 6258 1vi6_A) ( 3560 1l7d_A) 0.3846 0.2941 3.7282 ( 0 3 10) 0 0.6153 0.4706 13 17 ( 6258 1vi6_A) ( 3581 1l9x_A) 0.4615 0.2609 3.9114 ( 0 7 15) 0 0.4797 0.3882 13 23 ( 6258 1vi6_A) ( 3632 1li4_A) 0.3846 0.2778 2.9925 ( 0 3 10) 0 0.6090 0.4432 13 18 ( 6258 1vi6_A) ( 3801 1m2e_A) 0.4575 0.5201 3.1063 ( 2 11 21) 0 0.5276 0.7191 13 9 ( 6258 1vi6_A) ( 3896 1mb3_A) 0.5384 0.6999 3.8267 ( 0 8 21) 0 0.5856 0.7083 13 10 ( 6258 1vi6_A) ( 4066 1mx3_A) 0.5384 0.6363 3.5949 ( 0 6 21) 0 0.6865 0.8050 13 11 ( 6258 1vi6_A) ( 4130 1n57_A) 0.3077 0.2222 3.3289 ( 0 3 6) 0 0.6140 0.5109 13 18 ( 6258 1vi6_A) ( 4185 1nat ) 0.5857 0.7085 3.5926 ( 1 9 28) 0 0.5857 0.7085 13 10 ( 6258 1vi6_A) ( 4323 1nni_1) 0.3846 0.4545 4.9056 ( 0 2 10) 0 0.5474 0.6126 13 11 ( 6258 1vi6_A) ( 4433 1ny5_A) 0.4350 0.4717 6.7587 ( 1 5 21) 0 0.5703 0.6986 13 10 ( 6258 1vi6_A) ( 4474 1o1y_A) 0.6153 0.4210 4.1926 ( 0 11 28) 0 0.6572 0.4846 13 19 ( 6258 1vi6_A) ( 4590 1obo_A) 0.6152 0.7993 4.9218 ( 0 11 28) 0 0.6152 0.7993 13 10 ( 6258 1vi6_A) ( 4669 1oi7_A) 0.3846 0.4545 3.2038 ( 0 3 10) 0 0.4751 0.5186 13 11 ( 6258 1vi6_A) ( 4787 1ou0_A) 0.6573 0.5195 4.2297 ( 2 20 36) 0 0.6884 0.5284 13 17 ( 6258 1vi6_A) ( 4813 1oxb_B) 0.4282 0.5045 2.8764 ( 1 6 15) 0 0.5949 0.7336 13 10 ( 6258 1vi6_A) ( 4871 1p2f_A) 0.4612 0.5986 8.3043 ( 0 4 15) 0 0.5380 0.6983 13 10 ( 6258 1vi6_A) ( 4905 1p5f_A) 0.4282 0.4045 3.9259 ( 1 6 15) 0 0.6318 0.5988 13 14 ( 6258 1vi6_A) ( 4916 1p6u_A) 0.4615 0.5999 4.2629 ( 0 4 15) 0 0.4752 0.5999 13 10 ( 6258 1vi6_A) ( 4926 1p80_A) 0.6152 0.6152 4.4868 ( 0 11 28) 0 0.6152 0.6152 13 13 ( 6258 1vi6_A) ( 5096 1psd_A) 0.4615 0.6666 3.4281 ( 0 2 15) 0 0.5382 0.7764 13 9 ( 6258 1vi6_A) ( 5234 1q7r_A) 0.3846 0.2778 3.3669 ( 0 5 10) 0 0.6010 0.4415 13 18 ( 6258 1vi6_A) ( 5289 1qcz_A) 0.5384 0.6998 3.9600 ( 0 5 21) 0 0.6010 0.7517 13 10 ( 6258 1vi6_A) ( 5297 1qdl_B) 0.4615 0.3529 3.8949 ( 0 5 15) 0 0.6421 0.5146 13 17 ( 6258 1vi6_A) ( 5364 1qkk_A) 0.4351 0.4719 2.4107 ( 2 10 21) 0 0.4351 0.4999 13 10 ( 6258 1vi6_A) ( 5397 1qo0_D) 0.5385 0.5833 2.7172 ( 0 8 21) 0 0.5385 0.5833 13 12 ( 6258 1vi6_A) ( 5470 1qvz_A) 0.3845 0.3124 8.3898 ( 0 4 10) 0 0.7466 0.6166 13 16 ( 6258 1vi6_A) ( 5673 1rli_A) 0.3846 0.4166 5.1823 ( 0 2 10) 0 0.6010 0.6457 13 12 ( 6258 1vi6_A) ( 5752 1s2d_A) 0.5384 0.7774 4.3685 ( 0 9 21) 0 0.5384 0.7774 13 9 ( 6258 1vi6_A) ( 5785 1say_A) 0.4614 0.3158 5.8637 ( 0 7 15) 0 0.6788 0.4716 13 19 ( 6258 1vi6_A) ( 5842 1sqs_A) 0.5856 0.5502 4.6925 ( 1 9 28) 0 0.6191 0.5890 13 14 ( 6258 1vi6_A) ( 5920 1tmy ) 0.4575 0.5073 2.6523 ( 2 11 21) 0 0.5855 0.7081 13 10 ( 6258 1vi6_A) ( 6242 1vhq_A) 0.3077 0.2857 4.9550 ( 0 4 6) 0 0.4769 0.4631 13 14 ( 6258 1vi6_A) ( 6258 1vi6_A) 1.0000 1.0000 0.0000 ( 0 53 78) 0 1.0000 1.0000 13 13 ( 6258 1vi6_A) ( 6283 1vjg_A) 0.3844 0.4164 8.9813 ( 0 4 10) 0 0.5376 0.5820 13 12 ( 6258 1vi6_A) ( 6496 2nac_A) 0.5384 0.5384 3.3230 ( 0 9 21) 0 0.5950 0.5950 13 13 ( 6258 1vi6_A) ( 6624 5nul ) 0.6153 0.7996 4.2723 ( 0 10 28) 0 0.6191 0.7996 13 10 ( 6258 1vi6_A) ( 6640 7req_A) 0.5384 0.5832 4.4233 ( 0 9 21) 0 0.5472 0.5832 13 12 ( 6258 1vi6_A) ( 6642 7req_B) 0.3846 0.3846 5.1005 ( 0 3 10) 0 0.6047 0.6047 13 13 -------------------------------------------------------------------------------------------------------------------------