------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [6283, 6]: Comparing 1vjg_A and 1a04_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 16 (11 H + 5 S) secondary structure elements in 1a04_A, of which 11 satisfy the size requirements. 1.33474 [ 1.22405] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (17 . 10)) 5.442 {0/13:36} B:0 1.34512 [ 1.23744] ((1 . 1) (2 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (16 . 10)) 5.858 {1/18:36} B:0 1.50030 [ 1.37538] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (17 . 10)) 4.020 {0/8:28} B:0 1.50089 [ 1.37615] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8)) 5.298 {0/11:28} B:0 1.71665 [ 1.57449] ((1 . 1) (5 . 2) (6 . 3) (10 . 4) (11 . 5) (12 . 6) (16 . 8)) 7.475 {0/8:21} B:0 SIMILARITY (1/min{score1}): 0.7492 [and 1/min{score2}: 0.8170] [6283, 26]: Comparing 1vjg_A and 1a2o_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 27 (13 H + 14 S) secondary structure elements in 1a2o_A, of which 10 satisfy the size requirements. 1.33430 [ 1.11277] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (17 . 10)) 4.948 {0/15:36} B:0 1.50048 [ 1.25082] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8)) 4.530 {0/13:28} B:0 1.71456 [ 1.42905] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 7) (12 . 8)) 4.365 {0/12:21} B:0 2.00017 [ 1.66696] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 9)) 4.339 {0/7:15} B:0 2.00113 [ 1.66862] ((1 . 1) (3 . 4) (5 . 6) (6 . 7) (10 . 8) (11 . 9)) 6.984 {0/4:15} B:0 SIMILARITY (1/min{score1}): 0.7495 [and 1/min{score2}: 0.8987] [6283, 90]: Comparing 1vjg_A and 1a9x_B, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 34 (13 H + 21 S) secondary structure elements in 1a9x_B, of which 18 satisfy the size requirements. 1.50058 [ 2.25017] ((1 . 18) (3 . 19) (4 . 20) (5 . 21) (6 . 22) (10 . 23) (11 . 24) (17 . 34)) 4.758 {0/8:28} B:0 1.50096 [ 2.25028] ((1 . 18) (3 . 19) (4 . 20) (5 . 21) (6 . 22) (10 . 23) (11 . 24) (12 . 25)) 5.397 {0/12:28} B:0 2.00191 [ 3.00057] ((1 . 18) (3 . 19) (4 . 20) (5 . 21) (6 . 24) (16 . 34)) 7.960 {0/5:15} B:0 2.40102 [ 3.60030] ((1 . 18) (3 . 19) (4 . 22) (6 . 24) (16 . 34)) 7.796 {0/3:10} B:0 2.40203 [ 3.60060] ((4 . 18) (5 . 19) (6 . 22) (10 . 23) (11 . 24)) 9.263 {0/2:10} B:0 SIMILARITY (1/min{score1}): 0.6664 [and 1/min{score2}: 0.4444] [6283, 256]: Comparing 1vjg_A and 1b00_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1b00_A, of which 10 satisfy the size requirements. 1.33441 [ 1.11297] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (17 . 10)) 5.086 {0/14:36} B:0 2.00011 [ 1.66686] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 9)) 3.894 {0/6:15} B:0 2.00018 [ 1.66698] ((1 . 1) (3 . 2) (4 . 3) (5 . 6) (6 . 7) (11 . 9)) 4.400 {0/7:15} B:0 2.00026 [ 1.66712] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 7) (11 . 9)) 4.835 {0/6:15} B:0 2.00188 [ 1.66992] ((1 . 1) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (11 . 9)) 7.931 {0/4:15} B:0 SIMILARITY (1/min{score1}): 0.7494 [and 1/min{score2}: 0.8985] [6283, 266]: Comparing 1vjg_A and 1b1c_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 13 (7 H + 6 S) secondary structure elements in 1b1c_A, of which 11 satisfy the size requirements. 2.00018 [ 1.83357] ((1 . 2) (3 . 3) (4 . 4) (6 . 7) (10 . 10) (11 . 12)) 4.414 {0/5:15} B:0 2.00047 [ 1.83394] ((1 . 2) (3 . 3) (4 . 4) (5 . 6) (6 . 7) (11 . 9)) 5.590 {0/4:15} B:0 2.40030 [ 2.20040] ((1 . 2) (4 . 7) (6 . 9) (10 . 10) (11 . 12)) 5.764 {0/1:10} B:0 2.40084 [ 2.20109] ((5 . 1) (6 . 2) (10 . 6) (11 . 7) (16 . 13)) 7.422 {0/3:10} B:0 2.40126 [ 2.20163] ((5 . 3) (6 . 4) (10 . 6) (12 . 10) (16 . 13)) 8.221 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.7469 [and 1/min{score2}: 0.8134] [6283, 428]: Comparing 1vjg_A and 1bmt_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 16 (11 H + 5 S) secondary structure elements in 1bmt_A, of which 11 satisfy the size requirements. 1.33097 [ 1.26102] ((1 . 5) (3 . 6) (4 . 7) (5 . 8) (6 . 9) (10 . 10) (11 . 11) (12 . 12) (16 . 15) (17 . 16)) 8.066 {2/20:45} B:0 1.35076 [ 1.24467] ((1 . 5) (3 . 6) (4 . 7) (5 . 8) (6 . 9) (10 . 10) (11 . 11) (12 . 12) (17 . 15)) 5.686 {1/16:36} B:0 2.00022 [ 1.83362] ((1 . 5) (3 . 6) (4 . 7) (5 . 8) (6 . 9) (11 . 14)) 4.648 {0/6:15} B:0 2.00028 [ 1.83369] ((1 . 5) (3 . 6) (5 . 10) (6 . 11) (10 . 12) (11 . 14)) 4.911 {0/3:15} B:0 2.00143 [ 1.83519] ((1 . 5) (3 . 8) (4 . 9) (5 . 10) (6 . 11) (11 . 14)) 7.405 {0/4:15} B:0 SIMILARITY (1/min{score1}): 0.7513 [and 1/min{score2}: 0.8158] [6283, 477]: Comparing 1vjg_A and 1bvy_F, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 11 (6 H + 5 S) secondary structure elements in 1bvy_F, of which 9 satisfy the size requirements. 1.71560 [ 1.28883] ((1 . 1) (3 . 2) (4 . 3) (6 . 5) (11 . 7) (12 . 9) (17 . 11)) 6.461 {0/9:21} B:0 1.71593 [ 1.28961] ((1 . 1) (3 . 2) (4 . 3) (6 . 5) (11 . 7) (12 . 9) (16 . 11)) 6.833 {0/10:21} B:0 2.00158 [ 1.50373] ((1 . 1) (3 . 2) (4 . 3) (6 . 5) (11 . 7) (12 . 11)) 7.586 {0/7:15} B:0 2.00166 [ 1.50393] ((1 . 1) (3 . 2) (4 . 3) (6 . 5) (11 . 10) (12 . 11)) 7.688 {0/7:15} B:0 2.40173 [ 1.80409] ((1 . 1) (4 . 3) (6 . 7) (11 . 10) (12 . 11)) 8.900 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.5833 [and 1/min{score2}: 0.7775] [6283, 523]: Comparing 1vjg_A and 1c4k_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 68 (37 H + 31 S) secondary structure elements in 1c4k_A, of which 8 satisfy the size requirements. 3.00018 [ 2.00061] ((1 . 1) (4 . 4) (5 . 5) (6 . 6)) 5.979 {0/0:6} B:0 3.00032 [ 2.00108] ((1 . 1) (4 . 4) (5 . 5) (6 . 8)) 6.898 {0/1:6} B:0 3.00040 [ 2.00136] ((6 . 1) (11 . 4) (12 . 5) (16 . 9)) 7.316 {0/3:6} B:0 3.00068 [ 2.00230] ((3 . 5) (4 . 6) (6 . 8) (10 . 9)) 8.335 {0/0:6} B:0 3.00143 [ 2.00481] ((4 . 4) (5 . 5) (6 . 6) (10 . 9)) 10.033 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.6658 [and 1/min{score2}: 0.9932] [6283, 562]: Comparing 1vjg_A and 1ccw_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 11 (6 H + 5 S) secondary structure elements in 1ccw_A, of which 10 satisfy the size requirements. 1.36182 [ 1.15878] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 7) (11 . 8) (12 . 9) (17 . 11)) 5.904 {1/14:36} B:0 2.00301 [ 1.67186] ((5 . 2) (6 . 3) (10 . 4) (11 . 5) (12 . 7) (16 . 11)) 8.922 {0/6:15} B:0 2.00428 [ 1.67404] ((1 . 1) (3 . 4) (4 . 5) (5 . 7) (6 . 8) (10 . 11)) 9.741 {0/1:15} B:0 2.40004 [ 2.00008] ((1 . 1) (3 . 2) (4 . 3) (5 . 6) (6 . 8)) 3.547 {0/3:10} B:0 2.40019 [ 2.00032] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 8)) 5.103 {0/1:10} B:0 SIMILARITY (1/min{score1}): 0.7484 [and 1/min{score2}: 0.8961] [6283, 745]: Comparing 1vjg_A and 1d4a_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 21 (15 H + 6 S) secondary structure elements in 1d4a_A, of which 15 satisfy the size requirements. 1.34072 [ 1.67047] ((1 . 1) (3 . 2) (4 . 3) (6 . 7) (10 . 8) (11 . 10) (12 . 12) (15 . 16) (16 . 17)) 5.959 {1/21:36} B:0 1.50405 [ 1.87708] ((1 . 1) (5 . 2) (6 . 3) (10 . 6) (11 . 7) (12 . 8) (16 . 12) (17 . 13)) 7.747 {0/10:28} B:0 1.71696 [ 2.14423] ((1 . 1) (3 . 2) (4 . 3) (10 . 5) (12 . 8) (15 . 16) (16 . 17)) 7.713 {0/15:21} B:0 1.74913 [ 2.16101] ((1 . 1) (3 . 2) (4 . 3) (6 . 7) (11 . 10) (12 . 12) (17 . 17)) 7.190 {1/11:21} B:0 2.00392 [ 2.50201] ((1 . 1) (3 . 2) (4 . 3) (11 . 7) (12 . 8) (16 . 13)) 9.527 {0/7:15} B:0 SIMILARITY (1/min{score1}): 0.8289 [and 1/min{score2}: 0.6652] [6283, 786]: Comparing 1vjg_A and 1dbw_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1dbw_A, of which 10 satisfy the size requirements. 2.00008 [ 1.66681] ((1 . 1) (3 . 2) (4 . 3) (6 . 5) (10 . 8) (11 . 9)) 3.630 {0/5:15} B:0 2.00012 [ 1.66688] ((1 . 1) (3 . 2) (4 . 3) (6 . 7) (10 . 8) (11 . 9)) 4.003 {0/5:15} B:0 2.00015 [ 1.66693] ((1 . 1) (3 . 2) (5 . 6) (6 . 7) (10 . 8) (11 . 9)) 4.242 {0/3:15} B:0 2.40052 [ 2.00089] ((6 . 1) (10 . 4) (11 . 5) (12 . 6) (16 . 10)) 6.577 {0/5:10} B:0 2.40127 [ 2.00219] ((1 . 5) (3 . 6) (4 . 7) (5 . 8) (6 . 9)) 8.231 {0/0:10} B:0 SIMILARITY (1/min{score1}): 0.7476 [and 1/min{score2}: 0.8941] [6283, 793]: Comparing 1vjg_A and 1dcf_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1dcf_A, of which 10 satisfy the size requirements. 1.35493 [ 1.14752] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (17 . 10)) 5.326 {1/15:36} B:0 1.71451 [ 1.42895] ((1 . 1) (3 . 2) (4 . 3) (5 . 6) (6 . 7) (10 . 8) (11 . 9)) 4.136 {0/8:21} B:0 1.71725 [ 1.43368] ((1 . 1) (5 . 2) (6 . 3) (10 . 4) (11 . 5) (12 . 6) (16 . 8)) 7.915 {0/8:21} B:0 2.00013 [ 1.66689] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 9)) 4.043 {0/7:15} B:0 2.00154 [ 1.66933] ((1 . 1) (3 . 4) (5 . 6) (6 . 7) (10 . 8) (11 . 9)) 7.544 {0/3:15} B:0 SIMILARITY (1/min{score1}): 0.7478 [and 1/min{score2}: 0.8946] [6283, 971]: Comparing 1vjg_A and 1dxy, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 29 (16 H + 13 S) secondary structure elements in 1dxy, of which 9 satisfy the size requirements. 1.50145 [ 1.12842] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8)) 5.985 {0/8:28} B:0 1.71482 [ 1.28699] ((1 . 1) (3 . 2) (4 . 3) (5 . 6) (6 . 7) (10 . 8) (11 . 9)) 5.165 {0/7:21} B:0 1.71530 [ 1.28812] ((1 . 1) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8)) 6.054 {0/7:21} B:0 2.00024 [ 1.50058] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 8)) 4.754 {0/2:15} B:0 2.00037 [ 1.50088] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 7) (10 . 8)) 5.281 {0/2:15} B:0 SIMILARITY (1/min{score1}): 0.6660 [and 1/min{score2}: 0.8862] [6283, 980]: Comparing 1vjg_A and 1dz3_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1dz3_A, of which 10 satisfy the size requirements. 1.50085 [ 1.25147] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8)) 5.239 {0/10:28} B:0 1.71478 [ 1.42942] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 7) (12 . 8)) 5.044 {0/9:21} B:0 2.00023 [ 1.66707] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 8)) 4.704 {0/3:15} B:0 2.00039 [ 1.66733] ((1 . 1) (3 . 2) (5 . 4) (6 . 7) (10 . 8) (11 . 9)) 5.332 {0/3:15} B:0 2.00136 [ 1.66901] ((1 . 1) (3 . 4) (5 . 6) (6 . 7) (10 . 8) (11 . 9)) 7.306 {0/3:15} B:0 SIMILARITY (1/min{score1}): 0.6663 [and 1/min{score2}: 0.7991] [6283, 1042]: Comparing 1vjg_A and 1e5d_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 35 (15 H + 20 S) secondary structure elements in 1e5d_A, of which 10 satisfy the size requirements. 1.33791 [ 1.11898] ((1 . 26) (3 . 27) (4 . 28) (5 . 29) (6 . 30) (10 . 31) (11 . 32) (12 . 33) (16 . 35)) 7.313 {0/14:36} B:0 1.50248 [ 1.25427] ((1 . 26) (3 . 27) (4 . 28) (6 . 30) (10 . 31) (11 . 32) (12 . 33) (16 . 35)) 6.846 {0/11:28} B:0 2.00220 [ 1.67046] ((5 . 27) (6 . 28) (10 . 29) (11 . 30) (12 . 33) (16 . 35)) 8.247 {0/6:15} B:0 2.20850 [ 1.98437] ((5 . 27) (6 . 28) (10 . 29) (11 . 30) (12 . 31) (16 . 35)) 8.335 {1/6:15} B:0 2.40015 [ 2.00026] ((3 . 27) (4 . 28) (5 . 29) (6 . 30) (11 . 32)) 4.851 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.7474 [and 1/min{score2}: 0.8937] [6283, 1177]: Comparing 1vjg_A and 1eiw_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1eiw_A, of which 9 satisfy the size requirements. 2.00210 [ 1.50495] ((1 . 1) (5 . 2) (6 . 4) (10 . 6) (11 . 7) (12 . 8)) 8.147 {0/3:15} B:0 2.40194 [ 1.80458] ((4 . 1) (5 . 2) (6 . 4) (10 . 8) (11 . 9)) 9.155 {0/2:10} B:0 3.00017 [ 2.25040] ((1 . 1) (3 . 2) (4 . 4) (6 . 7)) 5.866 {0/1:6} B:0 3.00112 [ 2.25265] ((1 . 1) (3 . 2) (6 . 7) (10 . 10)) 9.434 {0/0:6} B:0 3.78153 [ 3.49448] ((1 . 1) (2 . 2) (4 . 4) (6 . 9)) 6.776 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.6370 [and 1/min{score2}: 0.7864] [6283, 1252]: Comparing 1vjg_A and 1es9_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 13 (8 H + 5 S) secondary structure elements in 1es9_A, of which 12 satisfy the size requirements. 1.20578 [ 1.20578] ((1 . 3) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (10 . 9) (11 . 10) (12 . 11) (16 . 13)) 4.150 {1/23:45} B:0 1.33911 [ 1.33911] ((1 . 3) (2 . 4) (4 . 6) (5 . 7) (6 . 8) (10 . 9) (11 . 10) (12 . 11) (16 . 13)) 3.943 {1/21:36} B:0 1.50340 [ 1.50340] ((3 . 2) (4 . 3) (5 . 7) (6 . 8) (10 . 9) (11 . 10) (12 . 11) (16 . 13)) 7.413 {0/12:28} B:0 1.71448 [ 1.71448] ((4 . 3) (5 . 7) (6 . 8) (10 . 9) (11 . 10) (12 . 11) (16 . 13)) 3.985 {0/9:21} B:0 2.00233 [ 2.00233] ((1 . 3) (3 . 7) (4 . 8) (5 . 9) (6 . 10) (11 . 12)) 8.366 {0/4:15} B:0 SIMILARITY (1/min{score1}): 0.8316 [and 1/min{score2}: 0.8316] [6283, 1253]: Comparing 1vjg_A and 1esc, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 22 (13 H + 9 S) secondary structure elements in 1esc, of which 17 satisfy the size requirements. 1.20359 [ 1.70127] ((1 . 1) (2 . 2) (3 . 4) (4 . 5) (5 . 6) (6 . 11) (10 . 14) (11 . 15) (12 . 17) (16 . 22)) 4.469 {1/27:45} B:0 1.33926 [ 1.89098] ((1 . 1) (2 . 2) (3 . 4) (4 . 5) (6 . 11) (10 . 14) (11 . 15) (12 . 17) (16 . 22)) 4.284 {1/21:36} B:0 2.00071 [ 2.83358] ((1 . 1) (3 . 4) (4 . 5) (5 . 6) (6 . 11) (12 . 14)) 6.209 {0/6:15} B:0 2.40045 [ 3.40016] ((1 . 5) (4 . 11) (10 . 14) (11 . 15) (12 . 17)) 6.360 {0/3:10} B:0 2.40055 [ 3.40019] ((1 . 11) (5 . 14) (6 . 15) (12 . 17) (16 . 22)) 6.681 {0/2:10} B:0 SIMILARITY (1/min{score1}): 0.8308 [and 1/min{score2}: 0.5878] [6283, 1266]: Comparing 1vjg_A and 1euc_B, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 36 (16 H + 20 S) secondary structure elements in 1euc_B, of which 12 satisfy the size requirements. 1.33405 [ 1.33405] ((1 . 27) (3 . 28) (4 . 29) (5 . 30) (6 . 31) (10 . 32) (11 . 33) (12 . 34) (17 . 36)) 4.593 {0/11:36} B:0 2.00032 [ 2.00032] ((3 . 28) (4 . 29) (5 . 30) (6 . 31) (10 . 34) (11 . 35)) 5.097 {0/6:15} B:0 2.00251 [ 2.00251] ((1 . 27) (3 . 30) (4 . 31) (5 . 32) (6 . 33) (11 . 35)) 8.525 {0/4:15} B:0 2.40083 [ 2.40083] ((5 . 28) (6 . 31) (10 . 32) (11 . 33) (12 . 34)) 7.416 {0/2:10} B:0 2.40150 [ 2.40150] ((1 . 31) (3 . 32) (4 . 33) (5 . 34) (6 . 35)) 8.585 {0/1:10} B:0 SIMILARITY (1/min{score1}): 0.7496 [and 1/min{score2}: 0.7496] [6283, 1379]: Comparing 1vjg_A and 1f2v_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 17 (11 H + 6 S) secondary structure elements in 1f2v_A, of which 16 satisfy the size requirements. 2.40073 [ 3.20031] ((3 . 3) (5 . 7) (10 . 11) (11 . 12) (12 . 13)) 7.171 {0/5:10} B:0 2.40096 [ 3.20041] ((5 . 7) (6 . 9) (10 . 11) (11 . 12) (12 . 15)) 7.684 {0/3:10} B:0 2.64828 [ 3.31572] ((1 . 6) (2 . 7) (5 . 11) (6 . 14) (11 . 16)) 5.084 {1/5:10} B:0 3.00007 [ 4.00003] ((4 . 12) (6 . 14) (10 . 15) (11 . 16)) 4.753 {0/0:6} B:0 3.00009 [ 4.00004] ((1 . 14) (3 . 15) (4 . 16) (5 . 17)) 5.054 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.5831 [and 1/min{score2}: 0.4530] [6283, 1397]: Comparing 1vjg_A and 1f4p_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 13 (5 H + 8 S) secondary structure elements in 1f4p_A, of which 9 satisfy the size requirements. 1.50136 [ 1.12821] ((1 . 1) (3 . 2) (4 . 3) (6 . 5) (10 . 8) (11 . 9) (12 . 10) (16 . 13)) 5.890 {0/11:28} B:0 1.50189 [ 1.12947] ((1 . 1) (3 . 2) (4 . 3) (6 . 5) (10 . 8) (11 . 9) (12 . 10) (17 . 13)) 6.401 {0/10:28} B:0 1.71463 [ 1.28652] ((1 . 1) (3 . 2) (4 . 3) (6 . 9) (10 . 10) (11 . 12) (17 . 13)) 4.607 {0/7:21} B:0 1.71523 [ 1.28795] ((1 . 1) (3 . 2) (4 . 3) (6 . 5) (11 . 9) (12 . 10) (17 . 13)) 5.944 {0/9:21} B:0 2.40028 [ 1.80066] ((1 . 1) (4 . 5) (6 . 9) (10 . 10) (11 . 12)) 5.632 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.6661 [and 1/min{score2}: 0.8864] [6283, 1443]: Comparing 1vjg_A and 1f8y_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 14 (10 H + 4 S) secondary structure elements in 1f8y_A, of which 11 satisfy the size requirements. 2.40031 [ 2.20040] ((1 . 1) (2 . 2) (6 . 7) (10 . 12) (11 . 13)) 5.786 {0/3:10} B:0 2.47276 [ 2.29281] ((11 . 1) (12 . 2) (15 . 5) (16 . 6) (17 . 9)) 7.379 {1/7:10} B:0 2.52904 [ 2.36260] ((2 . 2) (4 . 7) (5 . 9) (6 . 10) (11 . 13)) 5.673 {1/6:10} B:0 3.00062 [ 2.75080] ((3 . 6) (4 . 7) (6 . 10) (11 . 13)) 8.134 {0/2:6} B:0 3.78160 [ 3.66638] ((5 . 2) (10 . 6) (11 . 7) (12 . 9)) 7.496 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.5532 [and 1/min{score2}: 0.5744] [6283, 1516]: Comparing 1vjg_A and 1fjg_B, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 14 (9 H + 5 S) secondary structure elements in 1fjg_B, of which 12 satisfy the size requirements. 3.00011 [ 3.00011] ((2 . 4) (6 . 8) (10 . 9) (11 . 12)) 5.295 {0/3:6} B:0 3.00233 [ 3.00233] ((3 . 2) (5 . 4) (10 . 6) (16 . 13)) 11.340 {0/3:6} B:0 3.00422 [ 3.00422] ((3 . 2) (5 . 4) (10 . 6) (17 . 13)) 13.155 {0/2:6} B:0 5.15469 [ 5.15469] ((1 . 8) (3 . 9) (4 . 10) (5 . 13)) 4.685 {1/2:6} B:0 5.15474 [ 5.15474] ((3 . 4) (11 . 8) (12 . 9) (16 . 13)) 7.066 {1/2:6} B:0 SIMILARITY (1/min{score1}): 0.5830 [and 1/min{score2}: 0.5830] [6283, 1547]: Comparing 1vjg_A and 1flc_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 39 (9 H + 30 S) secondary structure elements in 1flc_A, of which 18 satisfy the size requirements. 1.71507 [ 2.57166] ((1 . 4) (4 . 7) (6 . 10) (10 . 13) (11 . 28) (12 . 29) (16 . 31)) 5.679 {0/7:21} B:0 2.00049 [ 2.45933] ((1 . 4) (4 . 7) (5 . 8) (6 . 10) (10 . 13) (11 . 28) (12 . 29) (16 . 31)) 6.362 {2/11:28} B:0 2.40036 [ 3.60011] ((1 . 4) (3 . 6) (4 . 7) (6 . 10) (10 . 13)) 6.010 {0/2:10} B:0 2.52129 [ 3.20421] ((4 . 7) (5 . 8) (10 . 13) (11 . 28) (12 . 29) (16 . 31)) 6.292 {2/9:15} B:0 3.00017 [ 4.50005] ((1 . 28) (2 . 29) (4 . 30) (5 . 31)) 5.860 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.5831 [and 1/min{score2}: 0.4066] [6283, 1659]: Comparing 1vjg_A and 1fye_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 19 (8 H + 11 S) secondary structure elements in 1fye_A, of which 18 satisfy the size requirements. 2.40011 [ 3.60003] ((1 . 3) (3 . 4) (4 . 5) (5 . 9) (6 . 11)) 4.465 {0/3:10} B:0 2.40032 [ 3.60010] ((4 . 8) (5 . 9) (6 . 11) (11 . 13) (12 . 14)) 5.851 {0/6:10} B:0 2.40047 [ 3.60014] ((1 . 3) (4 . 8) (5 . 9) (6 . 11) (12 . 14)) 6.441 {0/5:10} B:0 2.40062 [ 3.60018] ((1 . 1) (3 . 2) (4 . 3) (6 . 8) (11 . 11)) 6.897 {0/1:10} B:0 3.00009 [ 4.50003] ((4 . 1) (6 . 3) (10 . 4) (11 . 5)) 5.082 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.7397 [and 1/min{score2}: 0.4986] [6283, 1662]: Comparing 1vjg_A and 1fyx_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 13 (8 H + 5 S) secondary structure elements in 1fyx_A, of which 10 satisfy the size requirements. 2.00244 [ 1.67087] ((1 . 1) (3 . 2) (4 . 3) (6 . 6) (11 . 10) (12 . 13)) 8.459 {0/8:15} B:0 2.07459 [ 1.78885] ((4 . 1) (5 . 2) (6 . 3) (11 . 6) (12 . 8) (16 . 13)) 8.572 {1/8:15} B:0 3.00088 [ 2.50152] ((10 . 2) (11 . 3) (12 . 5) (17 . 11)) 8.886 {0/1:6} B:0 3.78150 [ 3.57062] ((1 . 6) (2 . 7) (4 . 10) (10 . 13)) 6.408 {1/3:6} B:0 3.78162 [ 3.57076] ((1 . 6) (2 . 8) (4 . 10) (5 . 11)) 7.646 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.6038 [and 1/min{score2}: 0.6997] [6283, 1700]: Comparing 1vjg_A and 1g2i_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 19 (8 H + 11 S) secondary structure elements in 1g2i_A, of which 14 satisfy the size requirements. 1.71464 [ 2.00022] ((1 . 1) (3 . 2) (4 . 3) (6 . 9) (11 . 12) (12 . 15) (17 . 19)) 4.645 {0/11:21} B:0 1.71480 [ 2.00032] ((1 . 1) (3 . 2) (4 . 3) (6 . 9) (11 . 12) (12 . 15) (16 . 19)) 5.105 {0/11:21} B:0 1.89192 [ 2.11936] ((1 . 1) (3 . 2) (4 . 3) (6 . 9) (10 . 11) (11 . 12) (17 . 19)) 5.117 {1/7:21} B:0 2.00015 [ 2.33343] ((1 . 1) (3 . 2) (4 . 3) (6 . 9) (11 . 12) (12 . 15)) 4.201 {0/8:15} B:0 2.00031 [ 2.33353] ((1 . 1) (3 . 2) (4 . 3) (6 . 9) (12 . 15) (16 . 19)) 5.060 {0/8:15} B:0 SIMILARITY (1/min{score1}): 0.6662 [and 1/min{score2}: 0.5888] [6283, 1803]: Comparing 1vjg_A and 1gdh_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 26 (14 H + 12 S) secondary structure elements in 1gdh_A, of which 10 satisfy the size requirements. 1.40301 [ 1.22316] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (16 . 26)) 6.725 {1/11:36} B:0 1.50259 [ 1.25446] ((1 . 1) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (16 . 26)) 6.922 {0/10:28} B:0 2.00043 [ 1.66742] ((1 . 1) (4 . 3) (5 . 4) (6 . 5) (10 . 8) (11 . 9)) 5.492 {0/5:15} B:0 2.00054 [ 1.66760] ((1 . 1) (4 . 3) (5 . 4) (6 . 7) (10 . 8) (11 . 9)) 5.799 {0/5:15} B:0 2.00329 [ 1.67233] ((1 . 1) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (10 . 8)) 9.117 {0/0:15} B:0 SIMILARITY (1/min{score1}): 0.7223 [and 1/min{score2}: 0.8370] [6283, 1901]: Comparing 1vjg_A and 1gpm_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 38 (17 H + 21 S) secondary structure elements in 1gpm_A, of which 16 satisfy the size requirements. 1.65570 [ 2.07259] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (17 . 17)) 5.187 {1/8:28} B:0 2.00054 [ 2.66689] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 7) (17 . 17)) 5.788 {0/3:15} B:0 2.40216 [ 3.20091] ((1 . 1) (3 . 4) (4 . 5) (6 . 7) (16 . 17)) 9.410 {0/3:10} B:0 3.00033 [ 4.00014] ((6 . 1) (10 . 4) (11 . 5) (12 . 8)) 6.964 {0/2:6} B:0 3.00054 [ 4.00023] ((5 . 2) (6 . 3) (10 . 4) (11 . 5)) 7.867 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.6040 [and 1/min{score2}: 0.4825] [6283, 2027]: Comparing 1vjg_A and 1h05_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 14 (9 H + 5 S) secondary structure elements in 1h05_A, of which 11 satisfy the size requirements. 1.50044 [ 1.37557] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (10 . 8) (11 . 9) (17 . 14)) 4.432 {0/5:28} B:0 1.71468 [ 1.57194] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (10 . 8) (11 . 13)) 4.767 {0/4:21} B:0 2.00023 [ 1.83363] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (6 . 9) (11 . 13)) 4.677 {0/5:15} B:0 2.36959 [ 2.35194] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (10 . 8) (11 . 9) (17 . 14)) 4.605 {3/13:36} B:0 2.36971 [ 2.35206] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (10 . 8) (11 . 9) (16 . 14)) 5.443 {3/13:36} B:0 SIMILARITY (1/min{score1}): 0.7493 [and 1/min{score2}: 0.8170] [6283, 2427]: Comparing 1vjg_A and 1i7q_B, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 19 (7 H + 12 S) secondary structure elements in 1i7q_B, of which 18 satisfy the size requirements. 1.33533 [ 2.00059] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 7) (11 . 8) (12 . 9) (17 . 19)) 5.939 {0/15:36} B:0 1.50066 [ 2.25020] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 7) (11 . 8) (17 . 19)) 4.916 {0/8:28} B:0 1.53595 [ 2.26096] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 7) (11 . 8) (16 . 19)) 6.071 {1/12:28} B:0 1.71461 [ 2.57152] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 8) (17 . 19)) 4.537 {0/7:21} B:0 2.00114 [ 3.00034] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 8) (16 . 19)) 6.998 {0/5:15} B:0 SIMILARITY (1/min{score1}): 0.7489 [and 1/min{score2}: 0.4999] [6283, 2470]: Comparing 1vjg_A and 1iex_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 47 (30 H + 17 S) secondary structure elements in 1iex_A, of which 12 satisfy the size requirements. 1.33687 [ 1.33687] ((1 . 35) (3 . 37) (4 . 38) (5 . 39) (6 . 40) (10 . 42) (11 . 43) (12 . 44) (16 . 46)) 6.854 {0/13:36} B:0 1.47351 [ 1.47351] ((1 . 35) (3 . 37) (4 . 38) (5 . 39) (6 . 40) (10 . 42) (11 . 43) (12 . 44) (17 . 46)) 6.639 {1/9:36} B:0 1.50197 [ 1.50197] ((1 . 35) (3 . 37) (4 . 38) (6 . 40) (10 . 42) (11 . 43) (12 . 44) (16 . 46)) 6.464 {0/11:28} B:0 2.00020 [ 2.00020] ((1 . 35) (3 . 37) (4 . 38) (6 . 40) (10 . 44) (11 . 45)) 4.540 {0/5:15} B:0 2.00034 [ 2.00034] ((1 . 35) (3 . 37) (4 . 38) (5 . 39) (6 . 40) (11 . 43)) 5.151 {0/4:15} B:0 SIMILARITY (1/min{score1}): 0.7480 [and 1/min{score2}: 0.7480] [6283, 2714]: Comparing 1vjg_A and 1j2y_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 13 (8 H + 5 S) secondary structure elements in 1j2y_A, of which 11 satisfy the size requirements. 1.81740 [ 1.77741] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (10 . 8) (11 . 9) (16 . 13)) 6.816 {3/18:36} B:0 2.00007 [ 1.83342] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (11 . 12)) 3.485 {0/5:15} B:0 2.00205 [ 1.83599] ((1 . 1) (3 . 3) (4 . 4) (6 . 6) (12 . 8) (16 . 13)) 8.097 {0/5:15} B:0 2.09242 [ 2.06659] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (10 . 8) (11 . 9) (17 . 13)) 4.820 {3/15:36} B:0 2.40119 [ 2.20154] ((4 . 1) (6 . 4) (11 . 6) (12 . 8) (16 . 13)) 8.099 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.7810 [and 1/min{score2}: 0.8329] [6283, 2729]: Comparing 1vjg_A and 1j4a_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 27 (16 H + 11 S) secondary structure elements in 1j4a_A, of which 10 satisfy the size requirements. 1.33593 [ 1.11559] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (16 . 27)) 6.343 {0/13:36} B:0 1.50130 [ 1.25224] ((1 . 1) (3 . 2) (4 . 3) (5 . 6) (6 . 7) (10 . 8) (11 . 9) (16 . 27)) 5.824 {0/13:28} B:0 1.71476 [ 1.42940] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 8) (11 . 9)) 5.013 {0/6:21} B:0 2.40039 [ 2.00068] ((1 . 1) (4 . 5) (5 . 6) (6 . 7) (10 . 8)) 6.149 {0/1:10} B:0 2.40171 [ 2.00295] ((5 . 2) (6 . 3) (10 . 4) (11 . 5) (12 . 8)) 8.873 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.7485 [and 1/min{score2}: 0.8964] [6283, 2809]: Comparing 1vjg_A and 1jbe_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1jbe_A, of which 10 satisfy the size requirements. 1.33696 [ 1.11735] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (16 . 10)) 6.897 {0/15:36} B:0 1.38314 [ 1.19268] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (17 . 10)) 5.784 {1/12:36} B:0 2.00016 [ 1.66694] ((1 . 1) (3 . 2) (4 . 3) (6 . 7) (10 . 8) (11 . 9)) 4.250 {0/5:15} B:0 2.00021 [ 1.66704] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 9)) 4.600 {0/7:15} B:0 2.00143 [ 1.66913] ((1 . 1) (3 . 4) (5 . 6) (6 . 7) (10 . 8) (11 . 9)) 7.398 {0/2:15} B:0 SIMILARITY (1/min{score1}): 0.7480 [and 1/min{score2}: 0.8950] [6283, 3034]: Comparing 1vjg_A and 1jrl_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 15 (10 H + 5 S) secondary structure elements in 1jrl_A, of which 10 satisfy the size requirements. 1.33362 [ 1.11160] ((1 . 1) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (10 . 8) (11 . 9) (12 . 11) (16 . 15)) 3.638 {0/16:36} B:0 2.00012 [ 1.66687] ((4 . 1) (6 . 7) (10 . 8) (11 . 9) (12 . 11) (16 . 15)) 3.986 {0/5:15} B:0 2.00198 [ 1.67008] ((1 . 1) (3 . 6) (4 . 7) (5 . 8) (6 . 9) (10 . 11)) 8.029 {0/0:15} B:0 2.00317 [ 1.67214] ((3 . 6) (4 . 7) (5 . 8) (6 . 9) (10 . 11) (12 . 15)) 9.037 {0/5:15} B:0 2.40009 [ 2.00015] ((1 . 1) (4 . 5) (5 . 6) (6 . 7) (10 . 11)) 4.208 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.7498 [and 1/min{score2}: 0.8996] [6283, 3073]: Comparing 1vjg_A and 1jvn_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 52 (24 H + 28 S) secondary structure elements in 1jvn_A, of which 19 satisfy the size requirements. 2.40019 [ 3.80005] ((1 . 1) (3 . 2) (4 . 5) (5 . 6) (6 . 8)) 5.094 {0/2:10} B:0 2.40026 [ 3.80007] ((1 . 1) (4 . 5) (5 . 6) (6 . 8) (17 . 21)) 5.558 {0/2:10} B:0 3.00004 [ 4.75001] ((1 . 1) (3 . 2) (4 . 3) (6 . 8)) 4.033 {0/1:6} B:0 3.00020 [ 4.75005] ((1 . 5) (4 . 8) (10 . 15) (11 . 16)) 6.114 {0/0:6} B:0 3.00061 [ 4.75015] ((6 . 1) (10 . 2) (11 . 5) (12 . 6)) 8.114 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.6660 [and 1/min{score2}: 0.4210] [6283, 3189]: Comparing 1vjg_A and 1k66_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 12 (7 H + 5 S) secondary structure elements in 1k66_A, of which 11 satisfy the size requirements. 1.33493 [ 1.22429] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 6) (10 . 7) (11 . 9) (12 . 10) (17 . 12)) 5.611 {0/12:36} B:0 1.33529 [ 1.22476] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 6) (10 . 7) (11 . 9) (12 . 10) (16 . 12)) 5.909 {0/13:36} B:0 1.50131 [ 1.37670] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 6) (11 . 9) (12 . 10) (16 . 12)) 5.834 {0/12:28} B:0 1.71469 [ 1.57196] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 6) (10 . 10) (11 . 11)) 4.819 {0/8:21} B:0 2.00030 [ 1.83372] ((1 . 1) (4 . 6) (5 . 7) (6 . 9) (10 . 10) (11 . 11)) 5.011 {0/2:15} B:0 SIMILARITY (1/min{score1}): 0.7491 [and 1/min{score2}: 0.8168] [6283, 3190]: Comparing 1vjg_A and 1k68_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 12 (7 H + 5 S) secondary structure elements in 1k68_A, of which 10 satisfy the size requirements. 1.33465 [ 1.11339] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 6) (10 . 7) (11 . 9) (12 . 10) (17 . 12)) 5.355 {0/12:36} B:0 1.71460 [ 1.42911] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 6) (10 . 10) (11 . 11)) 4.514 {0/8:21} B:0 2.00016 [ 1.66695] ((1 . 1) (4 . 3) (5 . 7) (6 . 9) (10 . 10) (11 . 11)) 4.311 {0/5:15} B:0 2.00026 [ 1.66711] ((1 . 1) (4 . 6) (5 . 7) (6 . 9) (10 . 10) (11 . 11)) 4.825 {0/2:15} B:0 2.40102 [ 2.00177] ((5 . 2) (6 . 3) (11 . 6) (12 . 7) (16 . 12)) 7.804 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.7493 [and 1/min{score2}: 0.8982] [6283, 3199]: Comparing 1vjg_A and 1k7c_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 18 (11 H + 7 S) secondary structure elements in 1k7c_A, of which 15 satisfy the size requirements. 1.34074 [ 1.67048] ((1 . 1) (4 . 4) (5 . 5) (6 . 7) (10 . 11) (11 . 12) (12 . 13) (16 . 17) (17 . 18)) 4.836 {1/20:36} B:0 1.34379 [ 1.67206] ((1 . 1) (4 . 4) (5 . 6) (6 . 7) (10 . 11) (11 . 12) (12 . 13) (16 . 17) (17 . 18)) 4.270 {1/18:36} B:0 1.39103 [ 1.69732] ((1 . 1) (4 . 4) (5 . 6) (6 . 7) (10 . 11) (11 . 12) (12 . 13) (15 . 15) (16 . 17)) 5.279 {2/23:36} B:0 1.50036 [ 1.87518] ((1 . 1) (4 . 4) (5 . 6) (6 . 7) (10 . 11) (11 . 12) (12 . 13) (16 . 17)) 4.228 {0/15:28} B:0 1.50064 [ 1.87533] ((1 . 1) (4 . 4) (5 . 5) (6 . 7) (10 . 11) (11 . 12) (12 . 13) (16 . 17)) 4.884 {0/17:28} B:0 SIMILARITY (1/min{score1}): 0.7491 [and 1/min{score2}: 0.5997] [6283, 3234]: Comparing 1vjg_A and 1k9v_F, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 20 (7 H + 13 S) secondary structure elements in 1k9v_F, of which 18 satisfy the size requirements. 1.89192 [ 2.63074] ((1 . 1) (3 . 2) (4 . 3) (6 . 4) (10 . 6) (11 . 7) (17 . 20)) 5.129 {1/7:21} B:0 2.00037 [ 3.00011] ((1 . 1) (3 . 2) (4 . 3) (6 . 4) (11 . 18) (16 . 20)) 5.280 {0/8:15} B:0 2.40008 [ 3.60002] ((1 . 1) (3 . 2) (4 . 3) (5 . 5) (6 . 7)) 4.162 {0/3:10} B:0 2.40024 [ 3.60007] ((1 . 1) (3 . 2) (4 . 3) (6 . 4) (10 . 8)) 5.422 {0/2:10} B:0 2.40028 [ 3.60008] ((1 . 1) (4 . 4) (5 . 5) (6 . 7) (16 . 20)) 5.649 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.6367 [and 1/min{score2}: 0.4401] [6283, 3238]: Comparing 1vjg_A and 1ka9_H, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 19 (6 H + 13 S) secondary structure elements in 1ka9_H, of which 16 satisfy the size requirements. 2.00061 [ 2.66692] ((1 . 1) (3 . 2) (4 . 4) (5 . 5) (6 . 7) (16 . 19)) 5.971 {0/6:15} B:0 2.40010 [ 3.20004] ((1 . 1) (3 . 2) (4 . 3) (6 . 7) (17 . 19)) 4.394 {0/3:10} B:0 2.40018 [ 3.20008] ((1 . 1) (3 . 2) (4 . 3) (5 . 5) (6 . 7)) 5.043 {0/3:10} B:0 3.00092 [ 4.00039] ((4 . 1) (5 . 2) (6 . 3) (15 . 13)) 8.986 {0/3:6} B:0 3.06981 [ 4.03015] ((2 . 6) (3 . 8) (5 . 13) (11 . 17)) 8.790 {1/6:6} B:0 SIMILARITY (1/min{score1}): 0.6656 [and 1/min{score2}: 0.4997] [6283, 3295]: Comparing 1vjg_A and 1kgs_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 20 (8 H + 12 S) secondary structure elements in 1kgs_A, of which 10 satisfy the size requirements. 1.74322 [ 1.60363] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (17 . 10)) 4.614 {1/7:28} B:0 1.82545 [ 1.60480] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 7) (16 . 10)) 6.436 {1/8:21} B:0 2.00015 [ 1.66693] ((1 . 1) (3 . 2) (4 . 3) (5 . 6) (6 . 7) (11 . 9)) 4.226 {0/6:15} B:0 2.01104 [ 1.85672] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 7) (17 . 10)) 3.946 {1/6:21} B:0 2.37849 [ 2.20688] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 9)) 4.022 {1/5:15} B:0 SIMILARITY (1/min{score1}): 0.6660 [and 1/min{score2}: 0.7984] [6283, 3412]: Comparing 1vjg_A and 1krw_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1krw_A, of which 10 satisfy the size requirements. 1.33591 [ 1.11555] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (16 . 10)) 6.332 {0/12:36} B:0 1.38329 [ 1.19293] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (17 . 10)) 5.920 {1/12:36} B:0 1.50165 [ 1.25284] ((1 . 1) (3 . 2) (4 . 3) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (16 . 10)) 6.180 {0/10:28} B:0 1.71452 [ 1.42897] ((1 . 1) (3 . 2) (4 . 3) (5 . 6) (6 . 7) (10 . 8) (11 . 9)) 4.188 {0/7:21} B:0 1.71455 [ 1.42903] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 8) (11 . 9)) 4.326 {0/7:21} B:0 SIMILARITY (1/min{score1}): 0.7491 [and 1/min{score2}: 0.8977] [6283, 3462]: Comparing 1vjg_A and 1kwg_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 49 (23 H + 26 S) secondary structure elements in 1kwg_A, of which 16 satisfy the size requirements. 1.50106 [ 2.00045] ((1 . 28) (3 . 30) (4 . 31) (6 . 32) (10 . 33) (11 . 34) (12 . 35) (17 . 43)) 5.530 {0/11:28} B:0 1.71465 [ 2.28587] ((1 . 28) (3 . 30) (4 . 31) (6 . 32) (10 . 35) (11 . 42) (17 . 43)) 4.669 {0/7:21} B:0 1.71488 [ 2.28596] ((1 . 28) (3 . 30) (4 . 31) (6 . 32) (10 . 33) (11 . 34) (12 . 35)) 5.290 {0/9:21} B:0 2.00026 [ 2.66677] ((1 . 28) (3 . 30) (4 . 31) (5 . 33) (6 . 34) (10 . 35)) 4.813 {0/3:15} B:0 2.00105 [ 2.66711] ((1 . 28) (3 . 30) (4 . 31) (6 . 32) (10 . 35) (16 . 43)) 6.858 {0/5:15} B:0 SIMILARITY (1/min{score1}): 0.6664 [and 1/min{score2}: 0.4999] [6283, 3560]: Comparing 1vjg_A and 1l7d_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 38 (19 H + 19 S) secondary structure elements in 1l7d_A, of which 17 satisfy the size requirements. 2.00021 [ 2.83341] ((1 . 1) (3 . 2) (4 . 3) (6 . 8) (10 . 13) (11 . 14)) 4.554 {0/5:15} B:0 2.40022 [ 3.40008] ((4 . 1) (5 . 2) (6 . 3) (10 . 5) (11 . 6)) 5.294 {0/2:10} B:0 2.40027 [ 3.40010] ((1 . 1) (5 . 7) (6 . 8) (10 . 13) (11 . 14)) 5.611 {0/2:10} B:0 2.40043 [ 3.40015] ((1 . 1) (3 . 2) (4 . 3) (11 . 11) (12 . 13)) 6.279 {0/4:10} B:0 2.40044 [ 3.40016] ((3 . 2) (4 . 3) (11 . 11) (12 . 13) (15 . 17)) 6.326 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.7896 [and 1/min{score2}: 0.5798] [6283, 3581]: Comparing 1vjg_A and 1l9x_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 27 (12 H + 15 S) secondary structure elements in 1l9x_A, of which 23 satisfy the size requirements. 2.40021 [ 4.60003] ((1 . 1) (3 . 5) (4 . 6) (6 . 8) (10 . 11)) 5.242 {0/2:10} B:0 2.40079 [ 4.60011] ((1 . 1) (5 . 5) (6 . 8) (11 . 10) (16 . 17)) 7.321 {0/6:10} B:0 2.64909 [ 4.64073] ((4 . 8) (5 . 9) (6 . 10) (12 . 17) (17 . 23)) 8.230 {1/5:10} B:0 3.00011 [ 5.75002] ((6 . 6) (10 . 7) (11 . 8) (12 . 9)) 5.336 {0/2:6} B:0 3.00037 [ 5.75005] ((5 . 5) (6 . 8) (10 . 9) (11 . 10)) 7.162 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.5903 [and 1/min{score2}: 0.3717] [6283, 3632]: Comparing 1vjg_A and 1li4_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 39 (21 H + 18 S) secondary structure elements in 1li4_A, of which 18 satisfy the size requirements. 1.33495 [ 2.00048] ((1 . 4) (3 . 5) (4 . 6) (5 . 9) (6 . 12) (10 . 13) (11 . 15) (12 . 16) (16 . 35)) 5.631 {0/15:36} B:0 1.50087 [ 2.25026] ((1 . 4) (3 . 5) (4 . 6) (5 . 9) (6 . 12) (11 . 15) (12 . 16) (16 . 35)) 5.262 {0/13:28} B:0 1.71484 [ 2.57159] ((1 . 4) (3 . 5) (4 . 6) (5 . 9) (6 . 12) (11 . 15) (12 . 16)) 5.202 {0/9:21} B:0 2.00128 [ 3.00038] ((1 . 4) (3 . 5) (4 . 6) (6 . 8) (11 . 15) (12 . 16)) 7.200 {0/6:15} B:0 2.40088 [ 3.60026] ((5 . 3) (6 . 4) (10 . 5) (11 . 6) (12 . 9)) 7.511 {0/0:10} B:0 SIMILARITY (1/min{score1}): 0.7540 [and 1/min{score2}: 0.5428] [6283, 3801]: Comparing 1vjg_A and 1m2e_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 11 (6 H + 5 S) secondary structure elements in 1m2e_A, of which 9 satisfy the size requirements. 1.71453 [ 1.28629] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7)) 4.233 {0/7:21} B:0 1.71472 [ 1.28675] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 9)) 4.905 {0/8:21} B:0 2.00015 [ 1.50035] ((1 . 1) (3 . 2) (4 . 3) (5 . 6) (6 . 7) (11 . 9)) 4.199 {0/6:15} B:0 2.11955 [ 1.74373] ((1 . 1) (2 . 2) (4 . 3) (5 . 6) (6 . 7) (11 . 9)) 5.837 {1/7:15} B:0 2.40160 [ 1.80378] ((1 . 1) (3 . 4) (4 . 5) (5 . 6) (6 . 7)) 8.725 {0/0:10} B:0 SIMILARITY (1/min{score1}): 0.6653 [and 1/min{score2}: 0.8830] [6283, 3896]: Comparing 1vjg_A and 1mb3_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1mb3_A, of which 10 satisfy the size requirements. 1.33482 [ 1.11367] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (17 . 10)) 5.514 {0/13:36} B:0 1.33580 [ 1.11535] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (16 . 10)) 6.259 {0/16:36} B:0 1.50179 [ 1.25308] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 7) (12 . 8) (16 . 10)) 6.310 {0/15:28} B:0 1.71736 [ 1.43387] ((1 . 1) (5 . 2) (6 . 3) (10 . 4) (11 . 5) (12 . 6) (16 . 10)) 7.986 {0/9:21} B:0 2.00014 [ 1.66690] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 9)) 4.121 {0/6:15} B:0 SIMILARITY (1/min{score1}): 0.7492 [and 1/min{score2}: 0.8979] [6283, 4066]: Comparing 1vjg_A and 1mx3_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 26 (14 H + 12 S) secondary structure elements in 1mx3_A, of which 11 satisfy the size requirements. 1.43067 [ 1.34375] ((1 . 1) (3 . 2) (4 . 3) (6 . 6) (10 . 7) (11 . 8) (12 . 9) (15 . 11) (16 . 26)) 6.598 {1/10:36} B:0 2.00024 [ 1.83364] ((1 . 1) (3 . 2) (4 . 3) (6 . 6) (10 . 9) (11 . 10)) 4.726 {0/5:15} B:0 2.00034 [ 1.83378] ((1 . 1) (3 . 2) (4 . 3) (6 . 8) (10 . 9) (11 . 10)) 5.184 {0/5:15} B:0 2.00110 [ 1.83476] ((1 . 1) (4 . 3) (6 . 6) (10 . 7) (11 . 8) (12 . 9)) 6.928 {0/6:15} B:0 2.40032 [ 2.20042] ((1 . 1) (3 . 2) (4 . 6) (5 . 7) (6 . 8)) 5.838 {0/2:10} B:0 SIMILARITY (1/min{score1}): 0.7461 [and 1/min{score2}: 0.8123] [6283, 4130]: Comparing 1vjg_A and 1n57_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 25 (12 H + 13 S) secondary structure elements in 1n57_A, of which 18 satisfy the size requirements. 1.64620 [ 2.11958] ((1 . 4) (3 . 7) (4 . 8) (5 . 12) (6 . 13) (10 . 16) (11 . 17) (12 . 21) (17 . 25)) 5.905 {2/14:36} B:0 1.69476 [ 2.31690] ((1 . 4) (3 . 7) (4 . 8) (6 . 13) (10 . 16) (11 . 17) (15 . 20) (16 . 25)) 6.458 {2/15:28} B:0 2.40064 [ 3.60019] ((1 . 4) (3 . 7) (4 . 8) (15 . 20) (16 . 21)) 6.950 {0/6:10} B:0 2.40070 [ 3.60021] ((4 . 8) (6 . 13) (11 . 17) (12 . 18) (17 . 25)) 7.108 {0/6:10} B:0 2.52955 [ 3.64091] ((1 . 4) (3 . 7) (4 . 8) (12 . 16) (15 . 20)) 7.528 {1/6:10} B:0 SIMILARITY (1/min{score1}): 0.6075 [and 1/min{score2}: 0.4718] [6283, 4185]: Comparing 1vjg_A and 1nat, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1nat, of which 10 satisfy the size requirements. 1.33446 [ 1.11306] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (17 . 10)) 5.147 {0/10:36} B:0 1.33506 [ 1.11410] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (16 . 10)) 5.730 {0/13:36} B:0 1.71442 [ 1.42880] ((1 . 1) (3 . 2) (4 . 3) (5 . 6) (6 . 7) (10 . 8) (11 . 9)) 3.642 {0/7:21} B:0 1.71462 [ 1.42915] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 8) (11 . 9)) 4.584 {0/6:21} B:0 2.40035 [ 2.00061] ((6 . 1) (10 . 4) (11 . 5) (12 . 6) (16 . 10)) 5.981 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.7494 [and 1/min{score2}: 0.8984] [6283, 4323]: Comparing 1vjg_A and 1nni_1, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 17 (9 H + 8 S) secondary structure elements in 1nni_1, of which 11 satisfy the size requirements. 1.50320 [ 1.37915] ((1 . 1) (3 . 2) (4 . 3) (6 . 6) (10 . 7) (11 . 9) (12 . 10) (16 . 17)) 7.301 {0/11:28} B:0 1.71642 [ 1.57419] ((1 . 1) (3 . 2) (4 . 3) (6 . 6) (10 . 7) (12 . 10) (16 . 17)) 7.286 {0/9:21} B:0 1.71727 [ 1.57530] ((1 . 1) (5 . 2) (6 . 3) (10 . 5) (11 . 6) (12 . 7) (16 . 10)) 7.928 {0/9:21} B:0 2.00116 [ 1.83484] ((1 . 1) (3 . 2) (4 . 3) (10 . 7) (12 . 10) (16 . 17)) 7.024 {0/7:15} B:0 2.40031 [ 2.20040] ((1 . 1) (4 . 6) (6 . 9) (10 . 10) (11 . 12)) 5.769 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.6664 [and 1/min{score2}: 0.7268] [6283, 4433]: Comparing 1vjg_A and 1ny5_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 32 (18 H + 14 S) secondary structure elements in 1ny5_A, of which 10 satisfy the size requirements. 1.33702 [ 1.11745] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (17 . 10)) 6.924 {0/10:36} B:0 1.34447 [ 1.13010] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (16 . 10)) 9.149 {0/13:36} B:0 1.50868 [ 1.26486] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 7) (12 . 8) (16 . 10)) 9.382 {0/12:28} B:0 1.71450 [ 1.42895] ((1 . 1) (3 . 2) (4 . 3) (5 . 6) (6 . 7) (10 . 8) (11 . 9)) 4.123 {0/7:21} B:0 1.72187 [ 1.44158] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 7) (12 . 10)) 10.020 {0/8:21} B:0 SIMILARITY (1/min{score1}): 0.7479 [and 1/min{score2}: 0.8949] [6283, 4474]: Comparing 1vjg_A and 1o1y_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 21 (10 H + 11 S) secondary structure elements in 1o1y_A, of which 19 satisfy the size requirements. 1.50070 [ 2.37518] ((1 . 1) (3 . 2) (4 . 3) (6 . 6) (10 . 7) (11 . 8) (15 . 18) (17 . 21)) 4.994 {0/9:28} B:0 1.53565 [ 2.38425] ((1 . 1) (3 . 2) (4 . 3) (6 . 6) (10 . 7) (11 . 8) (12 . 9) (15 . 18)) 5.729 {1/12:28} B:0 1.89461 [ 2.33226] ((1 . 1) (3 . 2) (4 . 3) (6 . 6) (10 . 7) (11 . 8) (12 . 9) (15 . 20) (16 . 21)) 6.443 {3/17:36} B:0 2.00027 [ 2.55721] ((1 . 1) (3 . 2) (4 . 3) (6 . 6) (10 . 7) (11 . 8) (15 . 20) (16 . 21)) 5.865 {2/11:28} B:0 3.00009 [ 4.75002] ((1 . 1) (3 . 2) (4 . 6) (6 . 8)) 4.993 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.6901 [and 1/min{score2}: 0.4665] [6283, 4590]: Comparing 1vjg_A and 1obo_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 16 (6 H + 10 S) secondary structure elements in 1obo_A, of which 10 satisfy the size requirements. 2.00125 [ 1.66882] ((3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 9) (16 . 16)) 7.157 {0/8:15} B:0 2.40067 [ 2.00115] ((1 . 1) (2 . 2) (6 . 5) (10 . 7) (17 . 10)) 7.010 {0/2:10} B:0 2.40111 [ 2.00191] ((3 . 4) (4 . 5) (6 . 9) (11 . 15) (12 . 16)) 7.962 {0/4:10} B:0 2.40145 [ 2.00250] ((5 . 2) (6 . 5) (11 . 9) (12 . 10) (16 . 16)) 8.511 {0/5:10} B:0 2.40174 [ 2.00300] ((1 . 1) (4 . 5) (6 . 9) (11 . 15) (12 . 16)) 8.912 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.6660 [and 1/min{score2}: 0.7984] [6283, 4669]: Comparing 1vjg_A and 1oi7_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 23 (10 H + 13 S) secondary structure elements in 1oi7_A, of which 11 satisfy the size requirements. 1.33418 [ 1.22332] ((1 . 15) (3 . 16) (4 . 17) (5 . 18) (6 . 19) (10 . 20) (11 . 21) (12 . 22) (17 . 23)) 4.789 {0/11:36} B:0 1.50187 [ 1.37742] ((1 . 15) (3 . 16) (4 . 17) (5 . 18) (6 . 19) (11 . 21) (12 . 22) (16 . 23)) 6.379 {0/12:28} B:0 2.00299 [ 1.83722] ((3 . 16) (4 . 17) (5 . 18) (6 . 19) (10 . 20) (12 . 23)) 8.906 {0/4:15} B:0 2.40014 [ 2.20019] ((3 . 16) (4 . 17) (5 . 18) (6 . 19) (10 . 22)) 4.787 {0/1:10} B:0 2.40020 [ 2.20026] ((1 . 15) (4 . 19) (5 . 20) (6 . 21) (10 . 22)) 5.180 {0/0:10} B:0 SIMILARITY (1/min{score1}): 0.7495 [and 1/min{score2}: 0.8174] [6283, 4787]: Comparing 1vjg_A and 1ou0_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 17 (11 H + 6 S) secondary structure elements in 1ou0_A, of which 17 satisfy the size requirements. 2.40036 [ 3.40013] ((6 . 9) (10 . 11) (11 . 12) (12 . 15) (16 . 17)) 5.999 {0/3:10} B:0 2.40159 [ 3.40056] ((4 . 9) (5 . 11) (6 . 12) (10 . 15) (12 . 17)) 8.716 {0/5:10} B:0 2.64929 [ 3.49799] ((4 . 9) (5 . 11) (6 . 12) (10 . 13) (12 . 17)) 8.644 {1/5:10} B:0 3.00007 [ 4.25002] ((1 . 6) (6 . 14) (10 . 15) (11 . 16)) 4.727 {0/0:6} B:0 3.00017 [ 4.25006] ((1 . 14) (3 . 15) (4 . 16) (5 . 17)) 5.923 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.7406 [and 1/min{score2}: 0.5681] [6283, 4813]: Comparing 1vjg_A and 1oxb_B, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1oxb_B, of which 10 satisfy the size requirements. 1.35523 [ 1.14802] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (17 . 10)) 5.625 {1/15:36} B:0 1.51988 [ 1.28366] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 7) (12 . 8) (17 . 10)) 5.454 {1/14:28} B:0 2.00016 [ 1.66694] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 9)) 4.265 {0/7:15} B:0 2.00033 [ 1.66724] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 7) (11 . 9)) 5.130 {0/7:15} B:0 2.00302 [ 1.67187] ((3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 9) (12 . 10)) 8.924 {0/10:15} B:0 SIMILARITY (1/min{score1}): 0.7479 [and 1/min{score2}: 0.8949] [6283, 4871]: Comparing 1vjg_A and 1p2f_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 20 (8 H + 12 S) secondary structure elements in 1p2f_A, of which 10 satisfy the size requirements. 1.36102 [ 1.15749] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (17 . 10)) 5.125 {1/14:36} B:0 1.50037 [ 1.25064] ((1 . 1) (3 . 2) (4 . 3) (5 . 6) (6 . 7) (10 . 8) (11 . 9) (17 . 10)) 4.250 {0/9:28} B:0 2.00011 [ 1.66685] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 9)) 3.875 {0/7:15} B:0 2.00018 [ 1.66697] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 7) (11 . 9)) 4.394 {0/7:15} B:0 2.40113 [ 2.00195] ((1 . 5) (3 . 6) (4 . 7) (5 . 8) (6 . 9)) 7.995 {0/1:10} B:0 SIMILARITY (1/min{score1}): 0.7347 [and 1/min{score2}: 0.8639] [6283, 4905]: Comparing 1vjg_A and 1p5f_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 19 (8 H + 11 S) secondary structure elements in 1p5f_A, of which 14 satisfy the size requirements. 1.74421 [ 1.91937] ((1 . 1) (3 . 2) (4 . 3) (6 . 8) (10 . 10) (11 . 11) (12 . 12) (16 . 18)) 6.541 {2/14:28} B:0 2.00027 [ 2.33350] ((1 . 1) (3 . 2) (4 . 3) (6 . 8) (11 . 11) (16 . 18)) 4.860 {0/7:15} B:0 2.29160 [ 2.34563] ((1 . 1) (3 . 2) (4 . 3) (5 . 7) (6 . 8) (10 . 10) (11 . 11) (12 . 14) (16 . 18)) 6.673 {4/18:36} B:0 2.41176 [ 2.45841] ((1 . 1) (3 . 2) (4 . 3) (5 . 7) (6 . 8) (10 . 10) (11 . 11) (12 . 14) (17 . 18)) 6.103 {4/17:36} B:0 2.65000 [ 2.96804] ((1 . 8) (2 . 10) (4 . 11) (5 . 14) (6 . 17)) 9.746 {1/5:10} B:0 SIMILARITY (1/min{score1}): 0.6655 [and 1/min{score2}: 0.6062] [6283, 4916]: Comparing 1vjg_A and 1p6u_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 12 (7 H + 5 S) secondary structure elements in 1p6u_A, of which 10 satisfy the size requirements. 1.33547 [ 1.11480] ((1 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (10 . 7) (11 . 9) (12 . 10) (17 . 12)) 6.042 {0/13:36} B:0 1.71730 [ 1.43376] ((1 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (11 . 9) (12 . 12)) 7.948 {0/8:21} B:0 2.00225 [ 1.67054] ((1 . 2) (3 . 5) (4 . 6) (5 . 7) (6 . 9) (10 . 12)) 8.288 {0/1:15} B:0 2.40018 [ 2.00031] ((1 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 9)) 5.057 {0/3:10} B:0 2.40053 [ 2.00092] ((6 . 2) (10 . 5) (11 . 6) (12 . 7) (16 . 12)) 6.631 {0/2:10} B:0 SIMILARITY (1/min{score1}): 0.7488 [and 1/min{score2}: 0.8970] [6283, 4926]: Comparing 1vjg_A and 1p80_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 52 (30 H + 22 S) secondary structure elements in 1p80_A, of which 13 satisfy the size requirements. 1.50116 [ 1.62591] ((1 . 38) (3 . 39) (4 . 40) (6 . 45) (10 . 47) (11 . 48) (12 . 49) (17 . 51)) 5.665 {0/13:28} B:0 1.71468 [ 1.85746] ((1 . 38) (3 . 39) (4 . 40) (6 . 45) (10 . 47) (11 . 48) (17 . 51)) 4.790 {0/7:21} B:0 1.71489 [ 1.85762] ((1 . 38) (3 . 39) (4 . 40) (6 . 45) (11 . 48) (12 . 49) (17 . 51)) 5.311 {0/11:21} B:0 2.00025 [ 2.16687] ((1 . 38) (3 . 39) (4 . 40) (6 . 45) (10 . 47) (11 . 48)) 4.808 {0/5:15} B:0 2.00069 [ 2.16721] ((1 . 38) (3 . 39) (4 . 40) (6 . 45) (11 . 48) (16 . 51)) 6.173 {0/7:15} B:0 SIMILARITY (1/min{score1}): 0.6662 [and 1/min{score2}: 0.6150] [6283, 5096]: Comparing 1vjg_A and 1psd_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 31 (15 H + 16 S) secondary structure elements in 1psd_A, of which 9 satisfy the size requirements. 1.33649 [ 1.00742] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (16 . 25)) 6.660 {0/7:36} B:0 1.33862 [ 1.01237] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (17 . 25)) 7.581 {0/5:36} B:0 1.50222 [ 1.13024] ((1 . 1) (3 . 2) (4 . 3) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (16 . 25)) 6.663 {0/5:28} B:0 1.72132 [ 1.30218] ((1 . 1) (5 . 2) (6 . 3) (10 . 4) (11 . 5) (12 . 6) (16 . 8)) 9.833 {0/2:21} B:0 2.00078 [ 1.50185] ((1 . 1) (3 . 2) (4 . 5) (5 . 6) (6 . 7) (10 . 8)) 6.362 {0/1:15} B:0 SIMILARITY (1/min{score1}): 0.7482 [and 1/min{score2}: 0.9926] [6283, 5234]: Comparing 1vjg_A and 1q7r_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 21 (9 H + 12 S) secondary structure elements in 1q7r_A, of which 18 satisfy the size requirements. 1.50171 [ 2.25051] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (10 . 8) (11 . 9) (17 . 21)) 6.239 {0/8:28} B:0 1.71480 [ 2.57158] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (10 . 8) (11 . 9)) 5.117 {0/6:21} B:0 2.40117 [ 3.60035] ((1 . 1) (4 . 6) (5 . 7) (6 . 9) (16 . 21)) 8.074 {0/3:10} B:0 2.40183 [ 3.60054] ((1 . 1) (3 . 3) (4 . 6) (6 . 9) (16 . 21)) 9.028 {0/3:10} B:0 2.40191 [ 3.60057] ((1 . 1) (3 . 5) (4 . 6) (6 . 9) (16 . 21)) 9.122 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.6661 [and 1/min{score2}: 0.4444] [6283, 5289]: Comparing 1vjg_A and 1qcz_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 11 (6 H + 5 S) secondary structure elements in 1qcz_A, of which 10 satisfy the size requirements. 1.52749 [ 1.29620] ((1 . 1) (2 . 2) (4 . 3) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (16 . 10)) 6.733 {1/13:28} B:0 2.40109 [ 2.00188] ((5 . 2) (6 . 3) (11 . 5) (12 . 8) (16 . 10)) 7.928 {0/5:10} B:0 2.40157 [ 2.00271] ((1 . 1) (3 . 4) (5 . 6) (6 . 7) (10 . 10)) 8.690 {0/1:10} B:0 2.40165 [ 2.00286] ((5 . 2) (6 . 3) (10 . 4) (12 . 6) (16 . 10)) 8.802 {0/5:10} B:0 2.40201 [ 2.00347] ((4 . 1) (5 . 2) (6 . 3) (10 . 4) (11 . 7)) 9.240 {0/2:10} B:0 SIMILARITY (1/min{score1}): 0.7337 [and 1/min{score2}: 0.8617] [6283, 5297]: Comparing 1vjg_A and 1qdl_B, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 18 (6 H + 12 S) secondary structure elements in 1qdl_B, of which 17 satisfy the size requirements. 1.50060 [ 2.12521] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 7) (11 . 8) (17 . 18)) 4.797 {0/8:28} B:0 2.00023 [ 2.83342] ((1 . 1) (3 . 2) (4 . 3) (6 . 5) (11 . 8) (16 . 18)) 4.705 {0/8:15} B:0 2.00046 [ 2.83350] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 8) (17 . 18)) 5.585 {0/3:15} B:0 2.40025 [ 3.40009] ((1 . 1) (3 . 2) (4 . 3) (6 . 8) (16 . 18)) 5.491 {0/4:10} B:0 2.40048 [ 3.40017] ((3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 9)) 6.467 {0/2:10} B:0 SIMILARITY (1/min{score1}): 0.6664 [and 1/min{score2}: 0.4705] [6283, 5364]: Comparing 1vjg_A and 1qkk_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1qkk_A, of which 10 satisfy the size requirements. 1.33817 [ 1.11942] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 8) (17 . 10)) 7.414 {0/13:36} B:0 1.72255 [ 1.44275] ((1 . 1) (3 . 2) (4 . 3) (6 . 5) (11 . 7) (12 . 8) (16 . 10)) 10.240 {0/12:21} B:0 2.00027 [ 1.66713] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 7) (11 . 9)) 4.867 {0/7:15} B:0 2.00486 [ 1.67504] ((1 . 1) (4 . 3) (6 . 5) (11 . 7) (12 . 8) (16 . 10)) 10.058 {0/9:15} B:0 2.00772 [ 1.67992] ((3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 9) (12 . 10)) 11.296 {0/9:15} B:0 SIMILARITY (1/min{score1}): 0.7473 [and 1/min{score2}: 0.8933] [6283, 5397]: Comparing 1vjg_A and 1qo0_D, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 12 (7 H + 5 S) secondary structure elements in 1qo0_D, of which 12 satisfy the size requirements. 1.71441 [ 1.71441] ((1 . 2) (3 . 3) (4 . 4) (5 . 6) (6 . 7) (10 . 8) (11 . 9)) 3.557 {0/7:21} B:0 2.40016 [ 2.40016] ((1 . 2) (4 . 5) (5 . 6) (6 . 7) (10 . 8)) 4.932 {0/0:10} B:0 2.40188 [ 2.40188] ((4 . 2) (5 . 3) (6 . 5) (10 . 8) (11 . 9)) 9.092 {0/3:10} B:0 2.41198 [ 2.41198] ((1 . 5) (3 . 6) (4 . 7) (5 . 8) (10 . 10)) 14.463 {0/1:10} B:0 2.41331 [ 2.41331] ((3 . 6) (4 . 7) (5 . 8) (6 . 9) (10 . 10)) 14.851 {0/1:10} B:0 SIMILARITY (1/min{score1}): 0.6594 [and 1/min{score2}: 0.6594] [6283, 5470]: Comparing 1vjg_A and 1qvz_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 21 (13 H + 8 S) secondary structure elements in 1qvz_A, of which 16 satisfy the size requirements. 1.74462 [ 2.12005] ((1 . 1) (2 . 2) (4 . 3) (6 . 9) (10 . 10) (11 . 12) (12 . 13) (16 . 21)) 6.997 {2/14:28} B:0 2.40013 [ 3.20005] ((1 . 1) (3 . 2) (4 . 3) (11 . 9) (15 . 15)) 4.641 {0/5:10} B:0 2.40057 [ 3.20024] ((6 . 1) (10 . 2) (11 . 3) (16 . 10) (17 . 11)) 6.736 {0/4:10} B:0 2.40067 [ 3.20028] ((1 . 1) (3 . 2) (4 . 3) (15 . 15) (16 . 17)) 7.032 {0/6:10} B:0 2.47254 [ 3.23155] ((1 . 1) (3 . 2) (4 . 3) (12 . 13) (15 . 15)) 6.763 {1/7:10} B:0 SIMILARITY (1/min{score1}): 0.7798 [and 1/min{score2}: 0.6108] [6283, 5673]: Comparing 1vjg_A and 1rli_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 12 (7 H + 5 S) secondary structure elements in 1rli_A, of which 12 satisfy the size requirements. 1.33674 [ 1.33674] ((1 . 1) (3 . 2) (4 . 3) (6 . 5) (10 . 6) (11 . 8) (12 . 9) (16 . 11) (17 . 12)) 6.790 {0/18:36} B:0 1.34415 [ 1.34415] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 8) (12 . 9) (16 . 11) (17 . 12)) 6.489 {1/19:36} B:0 1.50158 [ 1.50158] ((1 . 1) (3 . 2) (4 . 3) (6 . 5) (11 . 8) (12 . 9) (16 . 11) (17 . 12)) 6.118 {0/16:28} B:0 1.71872 [ 1.71872] ((1 . 1) (5 . 2) (6 . 3) (10 . 4) (11 . 5) (12 . 6) (16 . 9)) 8.757 {0/9:21} B:0 2.40025 [ 2.40025] ((6 . 3) (10 . 4) (11 . 5) (16 . 11) (17 . 12)) 5.469 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.7494 [and 1/min{score2}: 0.7494] [6283, 5752]: Comparing 1vjg_A and 1s2d_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 12 (5 H + 7 S) secondary structure elements in 1s2d_A, of which 9 satisfy the size requirements. 3.00031 [ 2.25073] ((6 . 3) (10 . 4) (12 . 6) (17 . 11)) 6.838 {0/3:6} B:0 3.00047 [ 2.25112] ((1 . 3) (4 . 5) (5 . 6) (6 . 7)) 7.612 {0/0:6} B:0 3.00118 [ 2.25279] ((1 . 3) (5 . 6) (6 . 7) (10 . 11)) 9.556 {0/0:6} B:0 3.04613 [ 3.01505] ((1 . 1) (3 . 2) (4 . 3) (6 . 5) (10 . 6) (11 . 7) (12 . 9) (17 . 11)) 6.942 {3/10:28} B:0 3.86015 [ 3.85073] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 6) (11 . 7) (12 . 9) (17 . 11)) 7.265 {5/13:36} B:0 SIMILARITY (1/min{score1}): 0.6237 [and 1/min{score2}: 0.7507] [6283, 5785]: Comparing 1vjg_A and 1say_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 35 (20 H + 15 S) secondary structure elements in 1say_A, of which 19 satisfy the size requirements. 2.00018 [ 3.16671] ((1 . 1) (3 . 2) (4 . 3) (6 . 8) (10 . 12) (11 . 13)) 4.386 {0/5:15} B:0 2.00075 [ 3.16685] ((1 . 1) (3 . 2) (4 . 3) (6 . 6) (10 . 9) (11 . 10)) 6.288 {0/5:15} B:0 2.40029 [ 3.80007] ((1 . 3) (3 . 5) (4 . 6) (5 . 9) (6 . 10)) 5.679 {0/3:10} B:0 2.40036 [ 3.80009] ((3 . 2) (4 . 3) (10 . 9) (11 . 10) (12 . 12)) 6.024 {0/4:10} B:0 2.40078 [ 3.80020] ((1 . 3) (3 . 5) (4 . 8) (5 . 9) (6 . 10)) 7.283 {0/1:10} B:0 SIMILARITY (1/min{score1}): 0.7654 [and 1/min{score2}: 0.5182] [6283, 5842]: Comparing 1vjg_A and 1sqs_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 14 (9 H + 5 S) secondary structure elements in 1sqs_A, of which 14 satisfy the size requirements. 1.50317 [ 1.75200] ((1 . 1) (3 . 2) (4 . 3) (6 . 6) (10 . 7) (11 . 8) (12 . 9) (16 . 11)) 7.285 {0/10:28} B:0 1.71634 [ 2.00129] ((1 . 1) (3 . 2) (4 . 3) (6 . 6) (11 . 8) (12 . 9) (16 . 11)) 7.218 {0/9:21} B:0 1.71652 [ 2.00141] ((1 . 1) (3 . 2) (4 . 3) (6 . 6) (11 . 8) (12 . 9) (17 . 11)) 7.377 {0/9:21} B:0 2.40520 [ 2.80328] ((1 . 6) (4 . 8) (5 . 9) (6 . 10) (12 . 12)) 11.729 {0/4:10} B:0 2.40569 [ 2.80359] ((4 . 1) (5 . 2) (6 . 3) (10 . 4) (16 . 9)) 11.993 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.7224 [and 1/min{score2}: 0.6296] [6283, 5920]: Comparing 1vjg_A and 1tmy, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 11 (6 H + 5 S) secondary structure elements in 1tmy, of which 10 satisfy the size requirements. 1.33440 [ 1.11296] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 7) (11 . 8) (12 . 9) (17 . 11)) 5.078 {0/14:36} B:0 1.33538 [ 1.11464] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (10 . 7) (11 . 8) (12 . 9) (16 . 11)) 5.974 {0/17:36} B:0 1.71450 [ 1.42894] ((1 . 1) (3 . 2) (4 . 3) (5 . 7) (6 . 8) (10 . 9) (11 . 10)) 4.104 {0/8:21} B:0 2.00012 [ 1.66687] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (11 . 10)) 3.985 {0/7:15} B:0 2.40032 [ 2.00055] ((6 . 1) (10 . 4) (11 . 5) (12 . 7) (16 . 11)) 5.829 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.7494 [and 1/min{score2}: 0.8985] [6283, 6242]: Comparing 1vjg_A and 1vhq_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 20 (11 H + 9 S) secondary structure elements in 1vhq_A, of which 14 satisfy the size requirements. 1.52051 [ 1.76304] ((1 . 1) (3 . 2) (4 . 3) (6 . 8) (10 . 11) (11 . 12) (12 . 15) (16 . 20)) 6.186 {1/14:28} B:0 1.52079 [ 1.76322] ((1 . 1) (3 . 2) (4 . 3) (6 . 8) (10 . 11) (11 . 12) (12 . 13) (16 . 20)) 6.443 {1/14:28} B:0 1.71484 [ 2.00035] ((1 . 1) (3 . 2) (4 . 3) (6 . 8) (11 . 12) (12 . 15) (16 . 20)) 5.202 {0/11:21} B:0 1.71487 [ 2.00037] ((1 . 1) (3 . 2) (4 . 3) (6 . 8) (10 . 11) (11 . 12) (17 . 20)) 5.280 {0/7:21} B:0 2.40062 [ 2.80039] ((1 . 1) (3 . 2) (4 . 3) (12 . 13) (17 . 20)) 6.888 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.6900 [and 1/min{score2}: 0.6125] [6283, 6258]: Comparing 1vjg_A and 1vi6_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 15 (8 H + 7 S) secondary structure elements in 1vi6_A, of which 13 satisfy the size requirements. 2.40179 [ 2.60141] ((3 . 8) (4 . 9) (6 . 10) (11 . 13) (12 . 14)) 8.981 {0/4:10} B:0 2.40189 [ 2.60149] ((1 . 7) (3 . 8) (4 . 9) (6 . 12) (10 . 14)) 9.102 {0/1:10} B:0 3.00023 [ 3.25018] ((3 . 5) (5 . 8) (6 . 9) (11 . 12)) 6.371 {0/2:6} B:0 3.00060 [ 3.25047] ((1 . 7) (4 . 9) (5 . 11) (10 . 14)) 8.073 {0/1:6} B:0 3.78147 [ 3.91549] ((2 . 8) (4 . 10) (5 . 11) (6 . 13)) 5.955 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.6452 [and 1/min{score2}: 0.6007] [6283, 6283]: Comparing 1vjg_A and 1vjg_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (10 . 10) (11 . 11) (12 . 12) (15 . 15) (16 . 16) (17 . 17)) 0.000 {0/46:66} B:0 2.40051 [ 2.40051] ((6 . 4) (10 . 5) (11 . 6) (12 . 10) (16 . 12)) 6.550 {0/4:10} B:0 2.40051 [ 2.40051] ((4 . 6) (5 . 10) (6 . 11) (10 . 12) (12 . 16)) 6.550 {0/4:10} B:0 10.02020 [10.02020] ((1 . 6) (3 . 10) (4 . 11) (10 . 15)) 7.526 {1/1:6} B:0 10.02020 [10.02020] ((6 . 1) (10 . 3) (11 . 4) (15 . 10)) 7.526 {1/1:6} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [6283, 6496]: Comparing 1vjg_A and 2nac_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 30 (17 H + 13 S) secondary structure elements in 2nac_A, of which 13 satisfy the size requirements. 1.26997 [ 1.35627] ((1 . 1) (3 . 2) (4 . 4) (5 . 5) (6 . 6) (10 . 7) (11 . 8) (12 . 9) (15 . 11) (16 . 27)) 7.382 {1/12:45} B:0 1.33792 [ 1.44805] ((1 . 1) (3 . 2) (4 . 4) (5 . 5) (6 . 6) (10 . 7) (11 . 8) (12 . 9) (16 . 27)) 7.314 {0/10:36} B:0 1.43185 [ 1.52411] ((1 . 1) (3 . 2) (4 . 4) (6 . 6) (10 . 7) (11 . 8) (12 . 9) (15 . 11) (16 . 27)) 7.276 {1/10:36} B:0 1.54447 [ 1.61972] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (10 . 9) (11 . 10) (12 . 11) (16 . 27)) 8.719 {1/8:36} B:0 2.40035 [ 2.60028] ((1 . 1) (4 . 4) (6 . 6) (10 . 7) (11 . 10)) 5.974 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.8096 [and 1/min{score2}: 0.7530] [6283, 6624]: Comparing 1vjg_A and 5nul, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 12 (6 H + 6 S) secondary structure elements in 5nul, of which 10 satisfy the size requirements. 1.50172 [ 1.25296] ((1 . 1) (3 . 2) (4 . 3) (6 . 6) (10 . 7) (11 . 8) (12 . 9) (16 . 12)) 6.246 {0/12:28} B:0 2.00031 [ 1.66720] ((1 . 1) (3 . 2) (4 . 3) (6 . 8) (10 . 9) (11 . 11)) 5.056 {0/5:15} B:0 2.00247 [ 1.67092] ((1 . 1) (3 . 2) (4 . 3) (6 . 6) (11 . 8) (12 . 12)) 8.487 {0/7:15} B:0 2.00385 [ 1.67329] ((1 . 1) (5 . 2) (6 . 6) (10 . 7) (11 . 8) (12 . 9)) 9.484 {0/5:15} B:0 2.40026 [ 2.00046] ((1 . 1) (5 . 7) (6 . 8) (10 . 9) (11 . 11)) 5.561 {0/1:10} B:0 SIMILARITY (1/min{score1}): 0.6659 [and 1/min{score2}: 0.7981] [6283, 6640]: Comparing 1vjg_A and 7req_A, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 50 (33 H + 17 S) secondary structure elements in 7req_A, of which 12 satisfy the size requirements. 1.36144 [ 1.36144] ((1 . 41) (3 . 42) (4 . 43) (5 . 44) (6 . 45) (10 . 46) (11 . 47) (12 . 48) (17 . 50)) 5.576 {1/14:36} B:0 2.00021 [ 2.00021] ((1 . 41) (3 . 42) (4 . 43) (5 . 44) (6 . 45) (11 . 49)) 4.560 {0/6:15} B:0 2.00023 [ 2.00023] ((1 . 41) (4 . 43) (5 . 46) (6 . 47) (10 . 48) (11 . 49)) 4.694 {0/6:15} B:0 2.00032 [ 2.00032] ((1 . 41) (3 . 42) (4 . 43) (5 . 44) (6 . 47) (11 . 49)) 5.072 {0/6:15} B:0 2.00033 [ 2.00033] ((1 . 41) (4 . 45) (5 . 46) (6 . 47) (10 . 48) (11 . 49)) 5.137 {0/3:15} B:0 SIMILARITY (1/min{score1}): 0.8256 [and 1/min{score2}: 0.8256] [6283, 6642]: Comparing 1vjg_A and 7req_B, based on their crossing files. There are 17 (10 H + 7 S) secondary structure elements in 1vjg_A, of which 12 satisfy the size requirements. There are 45 (28 H + 17 S) secondary structure elements in 7req_B, of which 13 satisfy the size requirements. 1.50168 [ 1.62632] ((1 . 34) (3 . 35) (4 . 36) (5 . 37) (6 . 38) (10 . 40) (11 . 41) (12 . 43)) 6.214 {0/6:28} B:0 1.71545 [ 1.85806] ((1 . 34) (3 . 35) (4 . 36) (5 . 37) (6 . 38) (11 . 41) (12 . 43)) 6.261 {0/5:21} B:0 2.00069 [ 2.16721] ((1 . 34) (3 . 35) (4 . 36) (5 . 37) (6 . 38) (10 . 43)) 6.164 {0/1:15} B:0 2.00481 [ 2.17045] ((3 . 35) (5 . 37) (6 . 38) (10 . 40) (11 . 41) (12 . 45)) 10.029 {0/6:15} B:0 2.00496 [ 2.17057] ((1 . 34) (3 . 35) (4 . 36) (5 . 37) (6 . 38) (12 . 45)) 10.106 {0/6:15} B:0 SIMILARITY (1/min{score1}): 0.7316 [and 1/min{score2}: 0.6798] -------------------------------------------------------------------------------------------------------------------------