------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6283 1vjg_A) ( 6 1a04_A) 0.7492 0.8170 5.4424 ( 0 13 36) 0 0.7492 0.8170 12 11 ( 6283 1vjg_A) ( 26 1a2o_A) 0.7495 0.8987 4.9481 ( 0 15 36) 0 0.7495 0.8987 12 10 ( 6283 1vjg_A) ( 90 1a9x_B) 0.6664 0.4444 4.7580 ( 0 8 28) 0 0.6664 0.4444 12 18 ( 6283 1vjg_A) ( 256 1b00_A) 0.7494 0.8985 5.0863 ( 0 14 36) 0 0.7494 0.8985 12 10 ( 6283 1vjg_A) ( 266 1b1c_A) 0.5000 0.5454 4.4144 ( 0 5 15) 0 0.7469 0.8134 12 11 ( 6283 1vjg_A) ( 428 1bmt_A) 0.7513 0.7930 8.0659 ( 2 20 45) 0 0.7513 0.8158 12 11 ( 6283 1vjg_A) ( 477 1bvy_F) 0.5829 0.7759 6.4614 ( 0 9 21) 0 0.5833 0.7775 12 9 ( 6283 1vjg_A) ( 523 1c4k_A) 0.3333 0.4998 5.9791 ( 0 0 6) 0 0.6658 0.9932 12 8 ( 6283 1vjg_A) ( 562 1ccw_A) 0.7343 0.8630 5.9040 ( 1 14 36) 0 0.7484 0.8961 12 10 ( 6283 1vjg_A) ( 745 1d4a_A) 0.7459 0.5986 5.9594 ( 1 21 36) 0 0.8289 0.6652 12 15 ( 6283 1vjg_A) ( 786 1dbw_A) 0.5000 0.5999 3.6298 ( 0 5 15) 0 0.7476 0.8941 12 10 ( 6283 1vjg_A) ( 793 1dcf_A) 0.7380 0.8714 5.3262 ( 1 15 36) 0 0.7478 0.8946 12 10 ( 6283 1vjg_A) ( 971 1dxy ) 0.6660 0.8862 5.9851 ( 0 8 28) 0 0.6660 0.8862 12 9 ( 6283 1vjg_A) ( 980 1dz3_A) 0.6663 0.7991 5.2386 ( 0 10 28) 0 0.6663 0.7991 12 10 ( 6283 1vjg_A) ( 1042 1e5d_A) 0.7474 0.8937 7.3128 ( 0 14 36) 0 0.7474 0.8937 12 10 ( 6283 1vjg_A) ( 1177 1eiw_A) 0.4995 0.6645 8.1466 ( 0 3 15) 0 0.6370 0.7864 12 9 ( 6283 1vjg_A) ( 1252 1es9_A) 0.8293 0.8293 4.1500 ( 1 23 45) 0 0.8316 0.8316 12 12 ( 6283 1vjg_A) ( 1253 1esc ) 0.8308 0.5878 4.4689 ( 1 27 45) 0 0.8308 0.5878 12 17 ( 6283 1vjg_A) ( 1266 1euc_B) 0.7496 0.7496 4.5934 ( 0 11 36) 0 0.7496 0.7496 12 12 ( 6283 1vjg_A) ( 1379 1f2v_A) 0.4165 0.3125 7.1706 ( 0 5 10) 0 0.5831 0.4530 12 16 ( 6283 1vjg_A) ( 1397 1f4p_A) 0.6661 0.8864 5.8898 ( 0 11 28) 0 0.6661 0.8864 12 9 ( 6283 1vjg_A) ( 1443 1f8y_A) 0.4166 0.4545 5.7862 ( 0 3 10) 0 0.5532 0.5744 12 11 ( 6283 1vjg_A) ( 1516 1fjg_B) 0.3333 0.3333 5.2946 ( 0 3 6) 0 0.5830 0.5830 12 12 ( 6283 1vjg_A) ( 1547 1flc_A) 0.5831 0.3889 5.6790 ( 0 7 21) 0 0.5831 0.4066 12 18 ( 6283 1vjg_A) ( 1659 1fye_A) 0.4166 0.2778 4.4647 ( 0 3 10) 0 0.7397 0.4986 12 18 ( 6283 1vjg_A) ( 1662 1fyx_A) 0.4994 0.5985 8.4585 ( 0 8 15) 0 0.6038 0.6997 12 10 ( 6283 1vjg_A) ( 1700 1g2i_A) 0.5832 0.4999 4.6453 ( 0 11 21) 0 0.6662 0.5888 12 14 ( 6283 1vjg_A) ( 1803 1gdh_A) 0.7128 0.8176 6.7247 ( 1 11 36) 0 0.7223 0.8370 12 10 ( 6283 1vjg_A) ( 1901 1gpm_A) 0.6040 0.4825 5.1867 ( 1 8 28) 0 0.6040 0.4825 12 16 ( 6283 1vjg_A) ( 2027 1h05_A) 0.6665 0.7270 4.4315 ( 0 5 28) 0 0.7493 0.8170 12 11 ( 6283 1vjg_A) ( 2427 1i7q_B) 0.7489 0.4999 5.9392 ( 0 15 36) 0 0.7489 0.4999 12 18 ( 6283 1vjg_A) ( 2470 1iex_A) 0.7480 0.7480 6.8536 ( 0 13 36) 0 0.7480 0.7480 12 12 ( 6283 1vjg_A) ( 2714 1j2y_A) 0.5502 0.5626 6.8164 ( 3 18 36) 0 0.7810 0.8329 12 11 ( 6283 1vjg_A) ( 2729 1j4a_A) 0.7485 0.8964 6.3429 ( 0 13 36) 0 0.7485 0.8964 12 10 ( 6283 1vjg_A) ( 2809 1jbe_A) 0.7480 0.8950 6.8969 ( 0 15 36) 0 0.7480 0.8950 12 10 ( 6283 1vjg_A) ( 3034 1jrl_A) 0.7498 0.8996 3.6383 ( 0 16 36) 0 0.7498 0.8996 12 10 ( 6283 1vjg_A) ( 3073 1jvn_A) 0.4166 0.2632 5.0936 ( 0 2 10) 0 0.6660 0.4210 12 19 ( 6283 1vjg_A) ( 3189 1k66_A) 0.7491 0.8168 5.6110 ( 0 12 36) 0 0.7491 0.8168 12 11 ( 6283 1vjg_A) ( 3190 1k68_A) 0.7493 0.8982 5.3553 ( 0 12 36) 0 0.7493 0.8982 12 10 ( 6283 1vjg_A) ( 3199 1k7c_A) 0.7459 0.5986 4.8355 ( 1 20 36) 0 0.7491 0.5997 12 15 ( 6283 1vjg_A) ( 3234 1k9v_F) 0.5286 0.3801 5.1292 ( 1 7 21) 0 0.6367 0.4401 12 18 ( 6283 1vjg_A) ( 3238 1ka9_H) 0.4998 0.3750 5.9713 ( 0 6 15) 0 0.6656 0.4997 12 16 ( 6283 1vjg_A) ( 3295 1kgs_A) 0.5737 0.6236 4.6143 ( 1 7 28) 0 0.6660 0.7984 12 10 ( 6283 1vjg_A) ( 3412 1krw_A) 0.7486 0.8964 6.3319 ( 0 12 36) 0 0.7491 0.8977 12 10 ( 6283 1vjg_A) ( 3462 1kwg_A) 0.6662 0.4999 5.5301 ( 0 11 28) 0 0.6664 0.4999 12 16 ( 6283 1vjg_A) ( 3560 1l7d_A) 0.4999 0.3529 4.5537 ( 0 5 15) 0 0.7896 0.5798 12 17 ( 6283 1vjg_A) ( 3581 1l9x_A) 0.4166 0.2174 5.2416 ( 0 2 10) 0 0.5903 0.3717 12 23 ( 6283 1vjg_A) ( 3632 1li4_A) 0.7491 0.4999 5.6312 ( 0 15 36) 0 0.7540 0.5428 12 18 ( 6283 1vjg_A) ( 3801 1m2e_A) 0.5833 0.7774 4.2332 ( 0 7 21) 0 0.6653 0.8830 12 9 ( 6283 1vjg_A) ( 3896 1mb3_A) 0.7492 0.8979 5.5139 ( 0 13 36) 0 0.7492 0.8979 12 10 ( 6283 1vjg_A) ( 4066 1mx3_A) 0.6990 0.7442 6.5983 ( 1 10 36) 0 0.7461 0.8123 12 11 ( 6283 1vjg_A) ( 4130 1n57_A) 0.6075 0.4718 5.9049 ( 2 14 36) 0 0.6075 0.4718 12 18 ( 6283 1vjg_A) ( 4185 1nat ) 0.7494 0.8984 5.1471 ( 0 10 36) 0 0.7494 0.8984 12 10 ( 6283 1vjg_A) ( 4323 1nni_1) 0.6652 0.7251 7.3014 ( 0 11 28) 0 0.6664 0.7268 12 11 ( 6283 1vjg_A) ( 4433 1ny5_A) 0.7479 0.8949 6.9239 ( 0 10 36) 0 0.7479 0.8949 12 10 ( 6283 1vjg_A) ( 4474 1o1y_A) 0.6664 0.4210 4.9938 ( 0 9 28) 0 0.6901 0.4665 12 19 ( 6283 1vjg_A) ( 4590 1obo_A) 0.4997 0.5992 7.1570 ( 0 8 15) 0 0.6660 0.7984 12 10 ( 6283 1vjg_A) ( 4669 1oi7_A) 0.7495 0.8174 4.7890 ( 0 11 36) 0 0.7495 0.8174 12 11 ( 6283 1vjg_A) ( 4787 1ou0_A) 0.4166 0.2941 5.9991 ( 0 3 10) 0 0.7406 0.5681 12 17 ( 6283 1vjg_A) ( 4813 1oxb_B) 0.7379 0.8711 5.6252 ( 1 15 36) 0 0.7479 0.8949 12 10 ( 6283 1vjg_A) ( 4871 1p2f_A) 0.7347 0.8639 5.1249 ( 1 14 36) 0 0.7347 0.8639 12 10 ( 6283 1vjg_A) ( 4905 1p5f_A) 0.5733 0.5210 6.5405 ( 2 14 28) 0 0.6655 0.6062 12 14 ( 6283 1vjg_A) ( 4916 1p6u_A) 0.7488 0.8970 6.0418 ( 0 13 36) 0 0.7488 0.8970 12 10 ( 6283 1vjg_A) ( 4926 1p80_A) 0.6662 0.6150 5.6652 ( 0 13 28) 0 0.6662 0.6150 12 13 ( 6283 1vjg_A) ( 5096 1psd_A) 0.7482 0.9926 6.6597 ( 0 7 36) 0 0.7482 0.9926 12 9 ( 6283 1vjg_A) ( 5234 1q7r_A) 0.6659 0.4443 6.2393 ( 0 8 28) 0 0.6661 0.4444 12 18 ( 6283 1vjg_A) ( 5289 1qcz_A) 0.6547 0.7715 6.7328 ( 1 13 28) 0 0.7337 0.8617 12 10 ( 6283 1vjg_A) ( 5297 1qdl_B) 0.6664 0.4705 4.7970 ( 0 8 28) 0 0.6664 0.4705 12 17 ( 6283 1vjg_A) ( 5364 1qkk_A) 0.7473 0.8933 7.4141 ( 0 13 36) 0 0.7473 0.8933 12 10 ( 6283 1vjg_A) ( 5397 1qo0_D) 0.5833 0.5833 3.5571 ( 0 7 21) 0 0.6594 0.6594 12 12 ( 6283 1vjg_A) ( 5470 1qvz_A) 0.5732 0.4717 6.9967 ( 2 14 28) 0 0.7798 0.6108 12 16 ( 6283 1vjg_A) ( 5673 1rli_A) 0.7481 0.7481 6.7898 ( 0 18 36) 0 0.7494 0.7494 12 12 ( 6283 1vjg_A) ( 5752 1s2d_A) 0.3333 0.4443 6.8379 ( 0 3 6) 0 0.6237 0.7507 12 9 ( 6283 1vjg_A) ( 5785 1say_A) 0.5000 0.3158 4.3864 ( 0 5 15) 0 0.7654 0.5182 12 19 ( 6283 1vjg_A) ( 5842 1sqs_A) 0.6653 0.5708 7.2847 ( 0 10 28) 0 0.7224 0.6296 12 14 ( 6283 1vjg_A) ( 5920 1tmy ) 0.7494 0.8985 5.0782 ( 0 14 36) 0 0.7494 0.8985 12 10 ( 6283 1vjg_A) ( 6242 1vhq_A) 0.6577 0.5672 6.1864 ( 1 14 28) 0 0.6900 0.6125 12 14 ( 6283 1vjg_A) ( 6258 1vi6_A) 0.4164 0.3844 8.9813 ( 0 4 10) 0 0.6452 0.6007 12 13 ( 6283 1vjg_A) ( 6283 1vjg_A) 1.0000 1.0000 0.0000 ( 0 46 66) 0 1.0000 1.0000 12 12 ( 6283 1vjg_A) ( 6496 2nac_A) 0.7874 0.7373 7.3822 ( 1 12 45) 0 0.8096 0.7530 12 13 ( 6283 1vjg_A) ( 6624 5nul ) 0.6659 0.7981 6.2457 ( 0 12 28) 0 0.6659 0.7981 12 10 ( 6283 1vjg_A) ( 6640 7req_A) 0.7345 0.7345 5.5760 ( 1 14 36) 0 0.8256 0.8256 12 12 ( 6283 1vjg_A) ( 6642 7req_B) 0.6659 0.6149 6.2139 ( 0 6 28) 0 0.7316 0.6798 12 13 -------------------------------------------------------------------------------------------------------------------------