------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1771 1g8m_A) ( 88 1a9x_A) 0.6408 0.8112 2.4710 ( 1 19 36) 0 0.7102 0.8957 14 11 ( 1771 1g8m_A) ( 325 1b93_A) 0.4390 0.4575 3.0501 ( 2 11 21) 0 0.5988 0.6318 14 13 ( 1771 1g8m_A) ( 1771 1g8m_A) 1.0000 1.0000 0.0000 ( 0 60 91) 0 1.0000 1.0000 14 14 -------------------------------------------------------------------------------------------------------------------------