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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(   88 1a9x_A)  (   88 1a9x_A)     1.0000   1.0000   0.0000 (   0   37   55)   0     1.0000   1.0000   11  11
(   88 1a9x_A)  (  325 1b93_A)     0.5455   0.5108   4.0105 (   2   12   28)   0     0.6561   0.6039   11  13
(   88 1a9x_A)  ( 1771 1g8m_A)     0.8112   0.6408   2.4710 (   1   19   36)   0     0.8957   0.7102   11  14

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