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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1031 1e4e_A)  (   84 1a9x_A)     0.3999   0.4443   6.5285 (   0    3    6)   0     0.4531   0.4839   10   9
( 1031 1e4e_A)  (  304 1b6r_A)     0.3999   0.6658   6.4482 (   0    3    6)   0     0.3999   0.6658   10   6
( 1031 1e4e_A)  (  947 1dv1_A)     0.5999   0.6666   3.8188 (   0    6   15)   0     0.5999   0.6666   10   9
( 1031 1e4e_A)  ( 1031 1e4e_A)     1.0000   1.0000   0.0000 (   0   34   45)   0     1.0000   1.0000   10  10
( 1031 1e4e_A)  ( 1158 1ehi_A)     0.6000   0.6667   1.6622 (   0    6   15)   0     0.6000   0.6667   10   9
( 1031 1e4e_A)  ( 1932 1gsa  )     0.6993   0.6993   5.7653 (   0   11   21)   0     0.6993   0.6993   10  10
( 1031 1e4e_A)  ( 1940 1gso_A)     0.4531   0.4531   4.6927 (   1    5   15)   0     0.4994   0.4994   10  10
( 1031 1e4e_A)  ( 2422 1i7n_A)     0.7077   0.7918   6.0595 (   2   18   28)   0     0.7077   0.8489   10   8
( 1031 1e4e_A)  ( 2552 1iow  )     0.6000   0.8571   2.2023 (   0    6   15)   0     0.6000   0.8571   10   7
( 1031 1e4e_A)  ( 3322 1kjq_A)     0.3999   0.4443   7.0626 (   0    0    6)   0     0.4999   0.5555   10   9
( 1031 1e4e_A)  ( 3776 1m0w_A)     0.4998   0.4998   6.0454 (   0    5   10)   0     0.5999   0.5999   10  10
( 1031 1e4e_A)  ( 5967 1uc8_A)     0.5999   0.8567   4.0352 (   0    6   15)   0     0.5999   0.8567   10   7

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