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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1940 1gso_A)  (   84 1a9x_A)     0.6999   0.7775   3.8408 (   0    7   21)   0     0.6999   0.7775   10   9
( 1940 1gso_A)  (  304 1b6r_A)     0.4999   0.8327   4.5269 (   0    4   10)   0     0.5000   0.8332   10   6
( 1940 1gso_A)  (  947 1dv1_A)     0.8996   0.9994   3.5523 (   0   14   36)   0     0.8996   0.9994   10   9
( 1940 1gso_A)  ( 1031 1e4e_A)     0.4531   0.4531   4.6927 (   1    5   15)   0     0.4531   0.4531   10  10
( 1940 1gso_A)  ( 1158 1ehi_A)     0.7340   0.7870   4.1229 (   1   10   28)   0     0.7340   0.7870   10   9
( 1940 1gso_A)  ( 1932 1gsa  )     0.6996   0.6996   4.9727 (   0    8   21)   0     0.6996   0.6996   10  10
( 1940 1gso_A)  ( 1940 1gso_A)     1.0000   1.0000   0.0000 (   0   27   45)   0     1.0000   1.0000   10  10
( 1940 1gso_A)  ( 2422 1i7n_A)     0.5000   0.6250   2.7029 (   0    1   10)   0     0.5000   0.6250   10   8
( 1940 1gso_A)  ( 2552 1iow  )     0.5886   0.6632   3.7626 (   1    7   21)   0     0.6997   0.9981   10   7
( 1940 1gso_A)  ( 3322 1kjq_A)     0.8998   0.9997   3.0362 (   0   11   36)   0     0.8998   0.9997   10   9
( 1940 1gso_A)  ( 3776 1m0w_A)     0.5999   0.5999   4.3113 (   0    4   15)   0     0.6998   0.6998   10  10
( 1940 1gso_A)  ( 5967 1uc8_A)     0.6998   0.9987   4.3333 (   0    9   21)   0     0.6998   0.9987   10   7

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