-------------------------------------------------------------------------------------------------------------------------

Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

-------------------------------------------------------------------------------------------------------------------------
( 3322 1kjq_A)  (   84 1a9x_A)     0.8887   0.8887   3.0399 (   0    4   28)   0     0.8887   0.8887    9   9
( 3322 1kjq_A)  (  304 1b6r_A)     0.5555   0.8332   3.2278 (   0    4   10)   0     0.5555   0.8332    9   6
( 3322 1kjq_A)  (  947 1dv1_A)     0.9998   0.9998   2.8097 (   0    9   36)   0     0.9998   0.9998    9   9
( 3322 1kjq_A)  ( 1031 1e4e_A)     0.4443   0.3999   7.0626 (   0    0    6)   0     0.5555   0.4999    9  10
( 3322 1kjq_A)  ( 1158 1ehi_A)     0.7776   0.7776   3.7342 (   0    4   21)   0     0.7776   0.7776    9   9
( 3322 1kjq_A)  ( 1932 1gsa  )     0.7775   0.6999   3.8658 (   0    6   21)   0     0.7775   0.6999    9  10
( 3322 1kjq_A)  ( 1940 1gso_A)     0.9997   0.8998   3.0362 (   0   11   36)   0     0.9997   0.8998    9  10
( 3322 1kjq_A)  ( 2422 1i7n_A)     0.5555   0.6250   2.7166 (   0    1   10)   0     0.5555   0.6250    9   8
( 3322 1kjq_A)  ( 2552 1iow  )     0.5554   0.7138   5.1097 (   0    2   10)   0     0.6665   0.8564    9   7
( 3322 1kjq_A)  ( 3322 1kjq_A)     1.0000   1.0000   0.0000 (   0   13   36)   0     1.0000   1.0000    9   9
( 3322 1kjq_A)  ( 3776 1m0w_A)     0.5555   0.5000   3.2750 (   0    1   10)   0     0.7777   0.6999    9  10
( 3322 1kjq_A)  ( 5967 1uc8_A)     0.6666   0.8571   2.5886 (   0    1   15)   0     0.6666   0.8571    9   7

-------------------------------------------------------------------------------------------------------------------------