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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3776 1m0w_A)  (   84 1a9x_A)     0.4999   0.5555   4.5576 (   0    3   10)   0     0.5999   0.6665   10   9
( 3776 1m0w_A)  (  304 1b6r_A)     0.5045   0.5820   2.6246 (   1    6   15)   0     0.5045   0.6655   10   6
( 3776 1m0w_A)  (  947 1dv1_A)     0.5000   0.5555   3.4356 (   0    5   10)   0     0.6999   0.7775   10   9
( 3776 1m0w_A)  ( 1031 1e4e_A)     0.4998   0.4998   6.0454 (   0    5   10)   0     0.5999   0.5999   10  10
( 3776 1m0w_A)  ( 1158 1ehi_A)     0.4000   0.4444   4.5838 (   0    2    6)   0     0.5385   0.5560   10   9
( 3776 1m0w_A)  ( 1932 1gsa  )     0.7991   0.7991   5.1488 (   0   13   28)   0     0.7991   0.7991   10  10
( 3776 1m0w_A)  ( 1940 1gso_A)     0.5999   0.5999   4.3113 (   0    4   15)   0     0.6998   0.6998   10  10
( 3776 1m0w_A)  ( 2422 1i7n_A)     0.6996   0.8739   4.9003 (   0   12   21)   0     0.6996   0.8739   10   8
( 3776 1m0w_A)  ( 2552 1iow  )     0.6998   0.9987   4.3228 (   0    3   21)   0     0.6998   0.9987   10   7
( 3776 1m0w_A)  ( 3322 1kjq_A)     0.5000   0.5555   3.2750 (   0    1   10)   0     0.6999   0.7777   10   9
( 3776 1m0w_A)  ( 3776 1m0w_A)     1.0000   1.0000   0.0000 (   0   32   45)   0     1.0000   1.0000   10  10
( 3776 1m0w_A)  ( 5967 1uc8_A)     0.6000   0.8570   3.0622 (   0    4   15)   0     0.6000   0.8570   10   7

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