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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3045 1jsc_A)  (  370 1bfd  )     0.8370   0.9032   2.8265 (   2   37   55)   0     0.8370   0.9032   13  12
( 3045 1jsc_A)  (  747 1d4o_A)     0.7603   0.8202   3.1925 (   2   33   45)   0     0.7603   0.8202   13  12
( 3045 1jsc_A)  (  842 1dhs  )     0.7691   0.4348   3.5245 (   0   27   45)   0     0.7691   0.4500   13  23
( 3045 1jsc_A)  ( 2765 1j8f_A)     0.7683   0.4545   3.0370 (   1   30   45)   0     0.7683   0.5235   13  22
( 3045 1jsc_A)  ( 3045 1jsc_A)     1.0000   1.0000   0.0000 (   0   61   78)   0     1.0000   1.0000   13  13
( 3045 1jsc_A)  ( 3802 1m2k_A)     0.8383   0.5777   4.2298 (   2   39   55)   0     0.8383   0.5981   13  19
( 3045 1jsc_A)  ( 4562 1o97_D)     0.6052   0.7647   2.3001 (   1   12   28)   0     0.6152   0.7993   13  10
( 3045 1jsc_A)  ( 4795 1ovm_A)     0.5951   0.6373   2.5415 (   2   20   28)   0     0.5951   0.6373   13  12
( 3045 1jsc_A)  ( 4847 1ozh_A)     0.8176   0.8753   2.6005 (   3   41   55)   0     0.8176   0.8753   13  12
( 3045 1jsc_A)  ( 5072 1pox_A)     0.8455   0.8455   2.9118 (   1   38   55)   0     0.8455   0.8455   13  13
( 3045 1jsc_A)  ( 5124 1pvd_A)     0.5384   0.5000   3.3307 (   0   17   21)   0     0.5384   0.5000   13  14
( 3045 1jsc_A)  ( 5172 1q14_A)     0.8376   0.4994   5.2209 (   2   39   55)   0     0.8376   0.4994   13  22
( 3045 1jsc_A)  ( 5771 1s5p_A)     0.6885   0.5611   3.7117 (   1   18   36)   0     0.6903   0.5885   13  16
( 3045 1jsc_A)  ( 6075 1upa_A)     0.8174   0.7654   3.6047 (   3   41   55)   0     0.8174   0.7654   13  14
( 3045 1jsc_A)  ( 6376 1zpd_A)     0.8401   0.8401   2.4955 (   2   41   55)   0     0.8401   0.8401   13  13

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