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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3802 1m2k_A)  (  370 1bfd  )     0.5565   0.7635   3.3336 (   4   36   55)   0     0.5565   0.7635   19  12
( 3802 1m2k_A)  (  747 1d4o_A)     0.6309   0.9929   3.0088 (   2   49   66)   0     0.6309   0.9929   19  12
( 3802 1m2k_A)  (  842 1dhs  )     0.5856   0.5023   4.0347 (   5   41   66)   0     0.5856   0.5026   19  23
( 3802 1m2k_A)  ( 2765 1j8f_A)     0.9324   0.8109   3.3753 (   6  113  153)   0     0.9324   0.8109   19  22
( 3802 1m2k_A)  ( 3045 1jsc_A)     0.5981   0.7658   4.3594 (   5   45   66)   0     0.5981   0.8383   19  13
( 3802 1m2k_A)  ( 3802 1m2k_A)     1.0000   1.0000   0.0000 (   0  140  171)   0     1.0000   1.0000   19  19
( 3802 1m2k_A)  ( 4562 1o97_D)     0.3953   0.4586   2.8799 (   3   14   36)   0     0.5038   0.7313   19  10
( 3802 1m2k_A)  ( 4795 1ovm_A)     0.3211   0.3312   3.4707 (   9   30   45)   0     0.4632   0.5149   19  12
( 3802 1m2k_A)  ( 4847 1ozh_A)     0.5789   0.9163   3.5821 (   0   40   55)   0     0.5789   0.9163   19  12
( 3802 1m2k_A)  ( 5072 1pox_A)     0.5260   0.6359   3.2985 (   5   35   55)   0     0.5683   0.7846   19  13
( 3802 1m2k_A)  ( 5124 1pvd_A)     0.4772   0.5266   3.1492 (   7   39   55)   0     0.5260   0.7130   19  14
( 3802 1m2k_A)  ( 5172 1q14_A)     0.8705   0.7779   2.8540 (  10  119  153)   0     0.8705   0.7779   19  22
( 3802 1m2k_A)  ( 5771 1s5p_A)     0.8418   0.9994   1.5827 (   2   91  120)   0     0.8418   0.9994   19  16
( 3802 1m2k_A)  ( 6075 1upa_A)     0.5734   0.7614   3.1162 (   3   39   55)   0     0.5776   0.7796   19  14
( 3802 1m2k_A)  ( 6376 1zpd_A)     0.3118   0.3198   3.4901 (   9   29   45)   0     0.4043   0.4518   19  13

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