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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4562 1o97_D)  (  370 1bfd  )     0.7647   0.6517   2.3996 (   1   12   28)   0     0.8649   0.7352   10  12
( 4562 1o97_D)  (  747 1d4o_A)     0.6633   0.5676   2.6626 (   1   10   21)   0     0.6633   0.6078   10  12
( 4562 1o97_D)  (  842 1dhs  )     0.7085   0.3859   3.5651 (   2   16   36)   0     0.7993   0.4199   10  23
( 4562 1o97_D)  ( 2765 1j8f_A)     0.5601   0.3523   2.4621 (   2   12   28)   0     0.7341   0.3852   10  22
( 4562 1o97_D)  ( 3045 1jsc_A)     0.7647   0.6052   2.3001 (   1   12   28)   0     0.7993   0.6152   10  13
( 4562 1o97_D)  ( 3802 1m2k_A)     0.4586   0.3953   2.8799 (   3   14   36)   0     0.7313   0.5038   10  19
( 4562 1o97_D)  ( 4562 1o97_D)     1.0000   1.0000   0.0000 (   0   28   45)   0     1.0000   1.0000   10  10
( 4562 1o97_D)  ( 4795 1ovm_A)     0.5386   0.4973   2.7876 (   2   12   21)   0     0.5998   0.4999   10  12
( 4562 1o97_D)  ( 4847 1ozh_A)     0.7904   0.6628   2.3190 (   1   17   28)   0     0.7904   0.6628   10  12
( 4562 1o97_D)  ( 5072 1pox_A)     0.7905   0.6128   2.2593 (   1   17   28)   0     0.7905   0.6128   10  13
( 4562 1o97_D)  ( 5124 1pvd_A)     0.6000   0.4286   3.2128 (   0   11   15)   0     0.6474   0.4887   10  14
( 4562 1o97_D)  ( 5172 1q14_A)     0.5180   0.3798   2.5081 (   3   16   36)   0     0.7736   0.4037   10  22
( 4562 1o97_D)  ( 5771 1s5p_A)     0.5000   0.3125   4.3245 (   0    4   10)   0     0.7997   0.5000   10  16
( 4562 1o97_D)  ( 6075 1upa_A)     0.7000   0.5000   2.0004 (   0   10   21)   0     0.7000   0.5000   10  14
( 4562 1o97_D)  ( 6376 1zpd_A)     0.5386   0.4752   2.3264 (   2   12   21)   0     0.6237   0.5474   10  13

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