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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5932 1tub_A)  ( 4632 1ofu_A)     0.9152   0.7850   3.2875 (   1   34   55)   0     0.9152   0.7850   12  14
( 5932 1tub_A)  ( 4666 1oi2_A)     0.6665   0.7271   4.0937 (   0   10   28)   0     0.8318   0.9067   12  11
( 5932 1tub_A)  ( 5932 1tub_A)     1.0000   1.0000   0.0000 (   0   46   66)   0     1.0000   1.0000   12  12
( 5932 1tub_A)  ( 6060 1un8_A)     0.5833   0.6363   3.7957 (   0   10   21)   0     0.8268   0.8990   12  11

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