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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4229 1nf9_A)  ( 2532 1im5_A)     0.7143   0.9999   1.1553 (   0   29   45)   0     0.7143   0.9999   14  10
( 4229 1nf9_A)  ( 2713 1j2r_A)     0.8569   0.9227   2.0622 (   1   47   66)   0     0.8569   0.9227   14  13
( 4229 1nf9_A)  ( 4186 1nba_A)     0.7857   0.8461   1.9592 (   0   35   55)   0     0.7857   0.8461   14  13
( 4229 1nf9_A)  ( 4229 1nf9_A)     1.0000   1.0000   0.0000 (   0   67   91)   0     1.0000   1.0000   14  14
( 4229 1nf9_A)  ( 6356 1yac_A)     0.8568   0.7998   1.8803 (   1   45   66)   0     0.8568   0.7998   14  15

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