------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3044 1jsc_A) ( 369 1bfd ) 0.9330 0.9330 2.1886 ( 1 53 91) 0 0.9330 0.9330 15 15 ( 3044 1jsc_A) ( 371 1bfd ) 0.8347 0.8847 2.7300 ( 3 41 78) 0 0.8347 0.8847 15 14 ( 3044 1jsc_A) ( 1908 1gpu_A) 0.7890 0.6621 4.1824 ( 2 33 66) 0 0.7890 0.6621 15 18 ( 3044 1jsc_A) ( 1909 1gpu_A) 0.4667 0.5000 2.7613 ( 0 11 21) 0 0.7402 0.7771 15 14 ( 3044 1jsc_A) ( 3044 1jsc_A) 1.0000 1.0000 0.0000 ( 0 72 105) 0 1.0000 1.0000 15 15 ( 3044 1jsc_A) ( 3046 1jsc_A) 0.6018 0.6506 2.7412 ( 4 28 55) 0 0.7988 0.9964 15 12 ( 3044 1jsc_A) ( 3275 1kek_A) 0.7949 0.6646 2.8638 ( 2 40 66) 0 0.7993 0.6700 15 18 ( 3044 1jsc_A) ( 3279 1kek_A) 0.8075 0.5146 4.7300 ( 4 46 78) 0 0.8953 0.5568 15 25 ( 3044 1jsc_A) ( 3566 1l8a_A) 0.3998 0.2609 7.8998 ( 0 5 15) 0 0.7700 0.5179 15 23 ( 3044 1jsc_A) ( 3567 1l8a_A) 0.5895 0.6199 3.7970 ( 4 27 55) 0 0.6793 0.7660 15 13 ( 3044 1jsc_A) ( 4263 1ni4_A) 0.7057 0.5183 3.3947 ( 2 23 55) 0 0.7057 0.5183 15 21 ( 3044 1jsc_A) ( 4264 1ni4_B) 0.8079 0.7312 3.7447 ( 4 46 78) 0 0.8079 0.7312 15 17 ( 3044 1jsc_A) ( 4702 1ols_A) 0.7861 0.6610 3.9132 ( 2 31 66) 0 0.7861 0.6610 15 18 ( 3044 1jsc_A) ( 4703 1ols_B) 0.7874 0.7874 4.5491 ( 4 42 78) 0 0.8172 0.8172 15 15 ( 3044 1jsc_A) ( 4796 1ovm_A) 0.7879 0.8402 3.0645 ( 2 32 66) 0 0.7879 0.8402 15 14 ( 3044 1jsc_A) ( 4846 1ozh_A) 0.9331 0.8749 1.4074 ( 1 56 91) 0 0.9331 0.8749 15 16 ( 3044 1jsc_A) ( 4848 1ozh_A) 0.8374 0.8374 2.8115 ( 3 42 78) 0 0.8374 0.8374 15 15 ( 3044 1jsc_A) ( 5071 1pox_A) 0.9331 0.8748 1.3476 ( 1 53 91) 0 0.9331 0.8748 15 16 ( 3044 1jsc_A) ( 5073 1pox_A) 0.7286 0.6957 2.5353 ( 4 39 66) 0 0.8391 0.7922 15 16 ( 3044 1jsc_A) ( 5123 1pvd_A) 0.7333 0.7857 2.3841 ( 0 26 55) 0 0.7333 0.7857 15 14 ( 3044 1jsc_A) ( 5125 1pvd_A) 0.8551 0.8551 3.6108 ( 2 36 78) 0 0.8551 0.8551 15 15 ( 3044 1jsc_A) ( 5438 1qs0_A) 0.7519 0.5873 4.0423 ( 3 33 66) 0 0.7519 0.5873 15 20 ( 3044 1jsc_A) ( 6049 1umd_A) 0.7844 0.6267 3.4982 ( 2 30 66) 0 0.7844 0.6267 15 19 ( 3044 1jsc_A) ( 6074 1upa_A) 0.8628 0.9231 3.4546 ( 2 48 78) 0 0.8628 0.9231 15 14 ( 3044 1jsc_A) ( 6076 1upa_A) 0.7521 0.8346 2.2950 ( 3 33 66) 0 0.7521 0.8346 15 13 ( 3044 1jsc_A) ( 6375 1zpd_A) 0.8663 0.9281 2.4672 ( 1 45 78) 0 0.8663 0.9281 15 14 ( 3044 1jsc_A) ( 6377 1zpd_A) 0.8420 0.8420 2.9882 ( 3 44 78) 0 0.8455 0.8455 15 15 -------------------------------------------------------------------------------------------------------------------------