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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 3566 1l8a_A) ( 369 1bfd ) 0.2217 0.2549 7.4777 ( 3 8 15) 0 0.5144 0.7463 23 15
( 3566 1l8a_A) ( 371 1bfd ) 0.5217 0.8562 3.4468 ( 1 36 66) 0 0.5217 0.8562 23 14
( 3566 1l8a_A) ( 1908 1gpu_A) 0.6906 0.8722 2.6694 ( 5 84 120) 0 0.6906 0.8722 23 18
( 3566 1l8a_A) ( 1909 1gpu_A) 0.4349 0.5435 3.5438 ( 5 29 55) 0 0.4349 0.5940 23 14
( 3566 1l8a_A) ( 3044 1jsc_A) 0.2609 0.3998 7.8998 ( 0 5 15) 0 0.5179 0.7700 23 15
( 3566 1l8a_A) ( 3046 1jsc_A) 0.5105 0.8181 4.0739 ( 4 38 66) 0 0.5105 0.9117 23 12
( 3566 1l8a_A) ( 3275 1kek_A) 0.4556 0.5101 4.7218 ( 6 34 66) 0 0.4752 0.6010 23 18
( 3566 1l8a_A) ( 3279 1kek_A) 0.2562 0.2369 3.5633 ( 2 10 15) 0 0.5449 0.5063 23 25
( 3566 1l8a_A) ( 3566 1l8a_A) 1.0000 1.0000 0.0000 ( 0 214 253) 0 1.0000 1.0000 23 23
( 3566 1l8a_A) ( 3567 1l8a_A) 0.4135 0.5762 3.3918 ( 3 19 45) 0 0.4301 0.7031 23 13
( 3566 1l8a_A) ( 4263 1ni4_A) 0.5648 0.6184 3.4496 ( 2 50 78) 0 0.5648 0.6184 23 21
( 3566 1l8a_A) ( 4264 1ni4_B) 0.4108 0.4633 4.3641 ( 4 20 55) 0 0.4763 0.6383 23 17
( 3566 1l8a_A) ( 4702 1ols_A) 0.6520 0.8328 4.3044 ( 1 75 105) 0 0.6520 0.8328 23 18
( 3566 1l8a_A) ( 4703 1ols_B) 0.4301 0.6313 4.3859 ( 2 19 45) 0 0.4660 0.6518 23 15
( 3566 1l8a_A) ( 4796 1ovm_A) 0.2174 0.3571 4.5070 ( 0 5 10) 0 0.5211 0.8502 23 14
( 3566 1l8a_A) ( 4846 1ozh_A) 0.5097 0.6872 4.2136 ( 3 28 66) 0 0.5097 0.6872 23 16
( 3566 1l8a_A) ( 4848 1ozh_A) 0.5172 0.7646 3.1791 ( 3 36 66) 0 0.5239 0.7913 23 15
( 3566 1l8a_A) ( 5071 1pox_A) 0.5198 0.7384 4.2486 ( 2 30 66) 0 0.5346 0.7384 23 16
( 3566 1l8a_A) ( 5073 1pox_A) 0.5494 0.7324 3.7926 ( 5 48 78) 0 0.5494 0.7493 23 16
( 3566 1l8a_A) ( 5123 1pvd_A) 0.4778 0.7804 5.0142 ( 1 20 55) 0 0.4778 0.7805 23 14
( 3566 1l8a_A) ( 5125 1pvd_A) 0.5216 0.7992 3.8472 ( 1 36 66) 0 0.5651 0.8655 23 15
( 3566 1l8a_A) ( 5438 1qs0_A) 0.6456 0.7370 4.9193 ( 5 73 105) 0 0.6456 0.7370 23 20
( 3566 1l8a_A) ( 6049 1umd_A) 0.6072 0.7331 3.7810 ( 3 59 91) 0 0.6840 0.8133 23 19
( 3566 1l8a_A) ( 6074 1upa_A) 0.4336 0.5397 5.9115 ( 4 23 55) 0 0.4780 0.7825 23 14
( 3566 1l8a_A) ( 6076 1upa_A) 0.5209 0.9088 3.8257 ( 2 37 66) 0 0.5209 0.9088 23 13
( 3566 1l8a_A) ( 6375 1zpd_A) 0.4779 0.7816 5.3368 ( 1 22 55) 0 0.4841 0.7816 23 14
( 3566 1l8a_A) ( 6377 1zpd_A) 0.5210 0.7936 3.7189 ( 2 38 66) 0 0.5647 0.8621 23 15
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