------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4264 1ni4_B) ( 369 1bfd ) 0.7509 0.8415 4.3826 ( 3 44 78) 0 0.7509 0.8415 17 15 ( 4264 1ni4_B) ( 371 1bfd ) 0.5625 0.5981 3.1293 ( 5 32 66) 0 0.6465 0.7843 17 14 ( 4264 1ni4_B) ( 1908 1gpu_A) 0.5552 0.5374 3.8891 ( 4 27 55) 0 0.6260 0.6034 17 18 ( 4264 1ni4_B) ( 1909 1gpu_A) 0.7032 0.8500 2.1124 ( 2 40 66) 0 0.7545 0.9027 17 14 ( 4264 1ni4_B) ( 3044 1jsc_A) 0.7312 0.8079 3.7447 ( 4 46 78) 0 0.7312 0.8079 17 15 ( 4264 1ni4_B) ( 3046 1jsc_A) 0.4493 0.4714 2.7624 ( 5 24 55) 0 0.5745 0.7662 17 12 ( 4264 1ni4_B) ( 3275 1kek_A) 0.7093 0.6862 4.1035 ( 6 52 91) 0 0.7093 0.6862 17 18 ( 4264 1ni4_B) ( 3279 1kek_A) 0.6910 0.4777 4.8183 ( 3 39 66) 0 0.6910 0.4887 17 25 ( 4264 1ni4_B) ( 3566 1l8a_A) 0.4633 0.4108 4.3641 ( 4 20 55) 0 0.6383 0.4763 17 23 ( 4264 1ni4_B) ( 3567 1l8a_A) 0.6466 0.8443 2.4964 ( 1 28 55) 0 0.6466 0.8443 17 13 ( 4264 1ni4_B) ( 4263 1ni4_A) 0.5225 0.4494 4.1945 ( 3 20 45) 0 0.5424 0.4584 17 21 ( 4264 1ni4_B) ( 4264 1ni4_B) 1.0000 1.0000 0.0000 ( 0 104 136) 0 1.0000 1.0000 17 17 ( 4264 1ni4_B) ( 4702 1ols_A) 0.4678 0.4423 5.5946 ( 1 12 28) 0 0.6560 0.6278 17 18 ( 4264 1ni4_B) ( 4703 1ols_B) 0.8334 0.9155 2.4389 ( 5 62 105) 0 0.8334 0.9304 17 15 ( 4264 1ni4_B) ( 4796 1ovm_A) 0.6098 0.7005 4.0707 ( 3 27 55) 0 0.6813 0.7980 17 14 ( 4264 1ni4_B) ( 4846 1ozh_A) 0.7972 0.8287 3.7561 ( 6 63 105) 0 0.7972 0.8399 17 16 ( 4264 1ni4_B) ( 4848 1ozh_A) 0.4970 0.5098 2.8715 ( 6 32 66) 0 0.6212 0.6878 17 15 ( 4264 1ni4_B) ( 5071 1pox_A) 0.6612 0.6701 3.8278 ( 11 78 120) 0 0.6612 0.6701 17 16 ( 4264 1ni4_B) ( 5073 1pox_A) 0.5726 0.5868 3.2174 ( 5 33 66) 0 0.5834 0.6138 17 16 ( 4264 1ni4_B) ( 5123 1pvd_A) 0.5974 0.6319 4.6360 ( 7 47 78) 0 0.6568 0.7572 17 14 ( 4264 1ni4_B) ( 5125 1pvd_A) 0.6316 0.7054 4.8879 ( 2 23 55) 0 0.6402 0.7054 17 15 ( 4264 1ni4_B) ( 5438 1qs0_A) 0.4113 0.3498 10.2648 ( 0 9 21) 0 0.6015 0.5281 17 20 ( 4264 1ni4_B) ( 6049 1umd_A) 0.5010 0.4785 4.2598 ( 5 28 55) 0 0.6137 0.5725 17 19 ( 4264 1ni4_B) ( 6074 1upa_A) 0.7006 0.8435 3.6683 ( 2 34 66) 0 0.7006 0.8435 17 14 ( 4264 1ni4_B) ( 6076 1upa_A) 0.5642 0.6358 3.5158 ( 3 21 55) 0 0.6414 0.8254 17 13 ( 4264 1ni4_B) ( 6375 1zpd_A) 0.6460 0.7277 4.5961 ( 4 35 66) 0 0.6715 0.7770 17 14 ( 4264 1ni4_B) ( 6377 1zpd_A) 0.6462 0.7007 3.0336 ( 4 35 66) 0 0.6910 0.7731 17 15 -------------------------------------------------------------------------------------------------------------------------