------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4846 1ozh_A) ( 369 1bfd ) 0.8124 0.8666 2.5575 ( 0 45 78) 0 0.8124 0.8666 16 15 ( 4846 1ozh_A) ( 371 1bfd ) 0.7841 0.8763 2.4995 ( 3 39 78) 0 0.7841 0.8763 16 14 ( 4846 1ozh_A) ( 1908 1gpu_A) 0.7399 0.6610 3.9061 ( 2 31 66) 0 0.7399 0.6710 16 18 ( 4846 1ozh_A) ( 1909 1gpu_A) 0.7422 0.8421 2.7363 ( 2 33 66) 0 0.7422 0.8421 16 14 ( 4846 1ozh_A) ( 3044 1jsc_A) 0.8749 0.9331 1.4074 ( 1 56 91) 0 0.8749 0.9331 16 15 ( 4846 1ozh_A) ( 3046 1jsc_A) 0.5612 0.6144 2.7697 ( 4 26 55) 0 0.7427 0.9706 16 12 ( 4846 1ozh_A) ( 3275 1kek_A) 0.8722 0.7762 3.1093 ( 2 53 91) 0 0.8722 0.7762 16 18 ( 4846 1ozh_A) ( 3279 1kek_A) 0.7953 0.5181 4.7561 ( 3 45 78) 0 0.7953 0.5181 16 25 ( 4846 1ozh_A) ( 3566 1l8a_A) 0.6872 0.5097 4.2136 ( 3 28 66) 0 0.6872 0.5097 16 23 ( 4846 1ozh_A) ( 3567 1l8a_A) 0.6389 0.7323 3.6355 ( 3 27 55) 0 0.6853 0.8400 16 13 ( 4846 1ozh_A) ( 4263 1ni4_A) 0.6671 0.5183 3.5314 ( 2 23 55) 0 0.6867 0.5236 16 21 ( 4846 1ozh_A) ( 4264 1ni4_B) 0.8399 0.7970 3.6153 ( 4 54 91) 0 0.8399 0.7972 16 17 ( 4846 1ozh_A) ( 4702 1ols_A) 0.7370 0.6593 3.7503 ( 2 29 66) 0 0.7398 0.6610 16 18 ( 4846 1ozh_A) ( 4703 1ols_B) 0.7931 0.8181 4.1836 ( 6 57 105) 0 0.7931 0.8234 16 15 ( 4846 1ozh_A) ( 4796 1ovm_A) 0.7411 0.8401 3.5528 ( 2 32 66) 0 0.7411 0.8401 16 14 ( 4846 1ozh_A) ( 4846 1ozh_A) 1.0000 1.0000 0.0000 ( 0 83 120) 0 1.0000 1.0000 16 16 ( 4846 1ozh_A) ( 4848 1ozh_A) 0.7866 0.8317 2.9218 ( 3 40 78) 0 0.7866 0.8317 16 15 ( 4846 1ozh_A) ( 5071 1pox_A) 0.9580 0.9580 1.4722 ( 5 76 120) 0 0.9580 0.9580 16 16 ( 4846 1ozh_A) ( 5073 1pox_A) 0.6797 0.6797 2.6813 ( 4 36 66) 0 0.7521 0.7521 16 16 ( 4846 1ozh_A) ( 5123 1pvd_A) 0.8122 0.9280 2.3942 ( 1 44 78) 0 0.8122 0.9280 16 14 ( 4846 1ozh_A) ( 5125 1pvd_A) 0.8007 0.8506 3.8290 ( 2 33 78) 0 0.8007 0.8506 16 15 ( 4846 1ozh_A) ( 5438 1qs0_A) 0.7000 0.5819 3.8380 ( 3 30 66) 0 0.7409 0.5970 16 20 ( 4846 1ozh_A) ( 6049 1umd_A) 0.7371 0.6260 3.3041 ( 2 29 66) 0 0.7490 0.6312 16 19 ( 4846 1ozh_A) ( 6074 1upa_A) 0.8096 0.9230 3.6112 ( 2 48 78) 0 0.8096 0.9230 16 14 ( 4846 1ozh_A) ( 6076 1upa_A) 0.7002 0.8053 2.4466 ( 3 30 66) 0 0.7436 0.9054 16 13 ( 4846 1ozh_A) ( 6375 1zpd_A) 0.7500 0.8571 2.3246 ( 0 37 66) 0 0.7500 0.8571 16 14 ( 4846 1ozh_A) ( 6377 1zpd_A) 0.7909 0.8373 3.1257 ( 3 42 78) 0 0.7941 0.8417 16 15 -------------------------------------------------------------------------------------------------------------------------