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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 5073 1pox_A) ( 369 1bfd ) 0.7100 0.7467 3.3833 ( 3 32 66) 0 0.8214 0.8623 16 15
( 5073 1pox_A) ( 371 1bfd ) 0.8660 0.9828 1.5991 ( 3 58 91) 0 0.8660 0.9828 16 14
( 5073 1pox_A) ( 1908 1gpu_A) 0.6980 0.6502 3.5733 ( 6 51 78) 0 0.7036 0.6502 16 18
( 5073 1pox_A) ( 1909 1gpu_A) 0.6264 0.6626 2.6895 ( 5 37 66) 0 0.6573 0.7309 16 14
( 5073 1pox_A) ( 3044 1jsc_A) 0.7018 0.7259 2.5507 ( 5 43 78) 0 0.7922 0.8391 16 15
( 5073 1pox_A) ( 3046 1jsc_A) 0.7500 0.9999 1.7734 ( 0 39 66) 0 0.7500 0.9999 16 12
( 5073 1pox_A) ( 3275 1kek_A) 0.6791 0.6064 2.4740 ( 2 29 55) 0 0.7281 0.6542 16 18
( 5073 1pox_A) ( 3279 1kek_A) 0.6999 0.4738 4.7038 ( 4 40 66) 0 0.6999 0.5019 16 25
( 5073 1pox_A) ( 3566 1l8a_A) 0.7324 0.5494 3.7926 ( 5 48 78) 0 0.7493 0.5494 16 23
( 5073 1pox_A) ( 3567 1l8a_A) 0.6232 0.7641 2.4777 ( 1 19 45) 0 0.6232 0.7641 16 13
( 5073 1pox_A) ( 4263 1ni4_A) 0.5000 0.3810 2.4310 ( 0 13 28) 0 0.6139 0.4733 16 21
( 5073 1pox_A) ( 4264 1ni4_B) 0.5868 0.5726 3.2174 ( 5 33 66) 0 0.6138 0.5799 16 17
( 5073 1pox_A) ( 4702 1ols_A) 0.6426 0.5990 2.8702 ( 5 39 66) 0 0.6863 0.6104 16 18
( 5073 1pox_A) ( 4703 1ols_B) 0.7493 0.7991 3.9959 ( 1 34 66) 0 0.7493 0.7991 16 15
( 5073 1pox_A) ( 4796 1ovm_A) 0.7272 0.7855 2.1300 ( 5 47 78) 0 0.7569 0.8310 16 14
( 5073 1pox_A) ( 4846 1ozh_A) 0.6797 0.6797 2.6813 ( 4 36 66) 0 0.7521 0.7521 16 16
( 5073 1pox_A) ( 4848 1ozh_A) 0.8647 0.9193 1.6448 ( 3 56 91) 0 0.8647 0.9193 16 15
( 5073 1pox_A) ( 5071 1pox_A) 0.6943 0.6943 2.7478 ( 5 42 78) 0 0.7883 0.7883 16 16
( 5073 1pox_A) ( 5073 1pox_A) 1.0000 1.0000 0.0000 ( 0 89 120) 0 1.0000 1.0000 16 16
( 5073 1pox_A) ( 5123 1pvd_A) 0.6069 0.6524 2.8846 ( 3 23 55) 0 0.6820 0.7751 16 14
( 5073 1pox_A) ( 5125 1pvd_A) 0.8376 0.8832 2.8824 ( 4 53 91) 0 0.8376 0.8832 16 15
( 5073 1pox_A) ( 5438 1qs0_A) 0.6500 0.5601 2.9678 ( 5 40 66) 0 0.7048 0.5838 16 20
( 5073 1pox_A) ( 6049 1umd_A) 0.7450 0.6294 2.5675 ( 2 37 66) 0 0.7450 0.6294 16 19
( 5073 1pox_A) ( 6074 1upa_A) 0.7177 0.7984 3.6001 ( 3 34 66) 0 0.8060 0.9160 16 14
( 5073 1pox_A) ( 6076 1upa_A) 0.8022 0.9721 1.4539 ( 3 51 78) 0 0.8022 0.9721 16 13
( 5073 1pox_A) ( 6375 1zpd_A) 0.7421 0.8420 3.1690 ( 2 33 66) 0 0.7490 0.8553 16 14
( 5073 1pox_A) ( 6377 1zpd_A) 0.8528 0.9032 1.9344 ( 4 61 91) 0 0.8528 0.9032 16 15
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