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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2436 1i9s_A)  (  754 1d5r_A)     0.7499   0.8997   3.4321 (   0   23   36)   0     0.7499   0.8997   12  10
( 2436 1i9s_A)  ( 1604 1fpz_A)     0.8332   0.7692   2.9602 (   0   25   45)   0     0.8332   0.7692   12  13
( 2436 1i9s_A)  ( 1725 1g4u_S)     0.7497   0.5999   4.2792 (   0   22   36)   0     0.7497   0.5999   12  15
( 2436 1i9s_A)  ( 2436 1i9s_A)     1.0000   1.0000   0.0000 (   0   50   66)   0     1.0000   1.0000   12  12
( 2436 1i9s_A)  ( 2959 1jln_A)     0.7498   0.5294   4.0574 (   0   23   36)   0     0.7498   0.5294   12  17
( 2436 1i9s_A)  ( 3585 1lar_A)     0.7498   0.5294   3.7414 (   0   23   36)   0     0.7498   0.5294   12  17
( 2436 1i9s_A)  ( 3754 1lw3_A)     0.7499   0.4091   3.2426 (   0   20   36)   0     0.8083   0.4532   12  22
( 2436 1i9s_A)  ( 3768 1lyv_A)     0.7497   0.5999   4.4269 (   0   22   36)   0     0.7497   0.5999   12  15
( 2436 1i9s_A)  ( 3963 1mkp  )     0.7500   0.8181   2.4889 (   0   22   36)   0     0.7500   0.8181   12  11
( 2436 1i9s_A)  ( 4655 1ohe_A)     0.5000   0.6666   3.8537 (   0   11   15)   0     0.5000   0.6666   12   9
( 2436 1i9s_A)  ( 4656 1ohe_A)     0.8333   0.7692   1.4937 (   0   25   45)   0     0.8333   0.7692   12  13
( 2436 1i9s_A)  ( 4857 1p15_A)     0.7499   0.8180   3.1505 (   0   22   36)   0     0.7499   0.8180   12  11
( 2436 1i9s_A)  ( 4948 1pa1_A)     0.7496   0.4999   4.5625 (   0   23   36)   0     0.7496   0.4999   12  18
( 2436 1i9s_A)  ( 5573 1r6h_A)     0.8331   0.9087   3.4986 (   0   22   45)   0     0.8331   0.9087   12  11
( 2436 1i9s_A)  ( 6243 1vhr_A)     0.8332   0.8332   2.8056 (   0   24   45)   0     0.8332   0.8332   12  12
( 2436 1i9s_A)  ( 6530 2shp_A)     0.7498   0.5294   3.9305 (   0   23   36)   0     0.7498   0.5294   12  17

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