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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3768 1lyv_A)  (  754 1d5r_A)     0.5999   0.8991   4.4149 (   0   24   36)   0     0.6665   0.9988   15  10
( 3768 1lyv_A)  ( 1604 1fpz_A)     0.7292   0.8378   3.3973 (   2   38   55)   0     0.7292   0.8378   15  13
( 3768 1lyv_A)  ( 1725 1g4u_S)     0.9262   0.9262   4.7147 (   3   70   91)   0     0.9262   0.9262   15  15
( 3768 1lyv_A)  ( 2436 1i9s_A)     0.5999   0.7497   4.4269 (   0   22   36)   0     0.5999   0.7497   15  12
( 3768 1lyv_A)  ( 2959 1jln_A)     0.9325   0.8231   4.0244 (   1   66   91)   0     0.9325   0.8231   15  17
( 3768 1lyv_A)  ( 3585 1lar_A)     0.9312   0.8224   4.2275 (   2   69   91)   0     0.9312   0.8224   15  17
( 3768 1lyv_A)  ( 3754 1lw3_A)     0.4138   0.3826   5.0207 (   8   34   55)   0     0.7924   0.5443   15  22
( 3768 1lyv_A)  ( 3768 1lyv_A)     1.0000   1.0000   0.0000 (   0   83  105)   0     1.0000   1.0000   15  15
( 3768 1lyv_A)  ( 3963 1mkp  )     0.7328   0.9973   4.0655 (   1   35   55)   0     0.7328   0.9973   15  11
( 3768 1lyv_A)  ( 4655 1ohe_A)     0.5333   0.8881   4.4045 (   0   19   28)   0     0.5333   0.8881   15   9
( 3768 1lyv_A)  ( 4656 1ohe_A)     0.6665   0.7689   4.1253 (   0   29   45)   0     0.6665   0.7689   15  13
( 3768 1lyv_A)  ( 4857 1p15_A)     0.7332   0.9992   3.7698 (   0   35   55)   0     0.7332   0.9992   15  11
( 3768 1lyv_A)  ( 4948 1pa1_A)     0.9311   0.7769   4.3379 (   2   69   91)   0     0.9311   0.7769   15  18
( 3768 1lyv_A)  ( 5573 1r6h_A)     0.6655   0.9036   4.4102 (   1   24   45)   0     0.6655   0.9036   15  11
( 3768 1lyv_A)  ( 6243 1vhr_A)     0.7329   0.9154   3.7925 (   1   38   55)   0     0.7329   0.9154   15  12
( 3768 1lyv_A)  ( 6530 2shp_A)     0.9311   0.8223   4.2813 (   2   68   91)   0     0.9311   0.8223   15  17

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