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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1878 1gmx_A)  (  989 1e0c_A)     0.8803   0.8803   2.5618 (   1   20   28)   0     0.8803   0.8803    9   9
( 1878 1gmx_A)  (  990 1e0c_A)     0.8784   0.8784   2.7114 (   1   19   28)   0     0.8784   0.8784    9   9
( 1878 1gmx_A)  ( 1878 1gmx_A)     1.0000   1.0000   0.0000 (   0   29   36)   0     1.0000   1.0000    9   9
( 1878 1gmx_A)  ( 2348 1hzm_A)     0.6666   0.7499   3.3884 (   0    9   15)   0     0.6666   0.7499    9   8
( 1878 1gmx_A)  ( 4688 1okg_A)     0.8784   0.9814   2.9133 (   1   19   28)   0     0.8784   0.9814    9   8
( 1878 1gmx_A)  ( 4689 1okg_A)     0.6666   0.8570   2.9117 (   0    9   15)   0     0.6666   0.8570    9   7
( 1878 1gmx_A)  ( 5274 1qb0_A)     0.8829   0.8829   2.8876 (   1   22   28)   0     0.8829   0.8829    9   9
( 1878 1gmx_A)  ( 5487 1qxn_A)     0.9363   0.7927   1.9491 (   2   27   36)   0     0.9363   0.7927    9  11
( 1878 1gmx_A)  ( 5635 1rhs  )     0.8785   0.9815   2.6503 (   1   19   28)   0     0.8785   0.9815    9   8
( 1878 1gmx_A)  ( 5636 1rhs  )     0.8803   0.9847   2.8497 (   1   20   28)   0     0.8803   0.9847    9   8
( 1878 1gmx_A)  ( 6087 1urh_A)     0.8784   0.9814   3.0177 (   1   19   28)   0     0.8784   0.9814    9   8
( 1878 1gmx_A)  ( 6088 1urh_A)     0.6659   0.9946   6.1537 (   0   11   15)   0     0.6659   0.9946    9   6

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