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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5274 1qb0_A)  (  989 1e0c_A)     0.8817   0.8817   2.9629 (   1   21   28)   0     0.8817   0.8817    9   9
( 5274 1qb0_A)  (  990 1e0c_A)     0.8783   0.8783   3.2468 (   1   19   28)   0     0.8783   0.8783    9   9
( 5274 1qb0_A)  ( 1878 1gmx_A)     0.8829   0.8829   2.8876 (   1   22   28)   0     0.8829   0.8829    9   9
( 5274 1qb0_A)  ( 2348 1hzm_A)     0.6240   0.6794   4.8732 (   1    9   15)   0     0.6240   0.6794    9   8
( 5274 1qb0_A)  ( 4688 1okg_A)     0.8799   0.9841   3.9298 (   1   20   28)   0     0.8799   0.9841    9   8
( 5274 1qb0_A)  ( 4689 1okg_A)     0.5555   0.7140   4.6169 (   0    6   10)   0     0.6241   0.7374    9   7
( 5274 1qb0_A)  ( 5274 1qb0_A)     1.0000   1.0000   0.0000 (   0   29   36)   0     1.0000   1.0000    9   9
( 5274 1qb0_A)  ( 5487 1qxn_A)     0.8886   0.7272   3.2865 (   0   21   28)   0     0.8886   0.7272    9  11
( 5274 1qb0_A)  ( 5635 1rhs  )     0.8817   0.9871   3.2743 (   1   21   28)   0     0.8817   0.9871    9   8
( 5274 1qb0_A)  ( 5636 1rhs  )     0.8815   0.9869   3.6235 (   1   21   28)   0     0.8815   0.9869    9   8
( 5274 1qb0_A)  ( 6087 1urh_A)     0.7777   0.8749   2.4231 (   0   18   21)   0     0.7777   0.8749    9   8
( 5274 1qb0_A)  ( 6088 1urh_A)     0.6372   0.8405   4.0492 (   1   10   15)   0     0.6372   0.8405    9   6

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