------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5487 1qxn_A) ( 989 1e0c_A) 0.7247 0.8818 2.4913 ( 1 21 28) 0 0.7247 0.8818 11 9 ( 5487 1qxn_A) ( 990 1e0c_A) 0.7241 0.8803 2.4865 ( 1 20 28) 0 0.7241 0.8803 11 9 ( 5487 1qxn_A) ( 1878 1gmx_A) 0.7927 0.9363 1.9491 ( 2 27 36) 0 0.7927 0.9363 11 9 ( 5487 1qxn_A) ( 2348 1hzm_A) 0.5284 0.6797 3.2798 ( 1 9 15) 0 0.5284 0.6797 11 8 ( 5487 1qxn_A) ( 4688 1okg_A) 0.7241 0.9848 2.6739 ( 1 20 28) 0 0.7241 0.9848 11 8 ( 5487 1qxn_A) ( 4689 1okg_A) 0.5454 0.8570 2.8312 ( 0 9 15) 0 0.5454 0.8570 11 7 ( 5487 1qxn_A) ( 5274 1qb0_A) 0.7272 0.8886 3.2865 ( 0 21 28) 0 0.7272 0.8886 11 9 ( 5487 1qxn_A) ( 5487 1qxn_A) 1.0000 1.0000 0.0000 ( 0 44 55) 0 1.0000 1.0000 11 11 ( 5487 1qxn_A) ( 5635 1rhs ) 0.7241 0.9848 2.6875 ( 1 20 28) 0 0.7241 0.9848 11 8 ( 5487 1qxn_A) ( 5636 1rhs ) 0.7241 0.9848 2.6578 ( 1 20 28) 0 0.7241 0.9848 11 8 ( 5487 1qxn_A) ( 6087 1urh_A) 0.7241 0.9848 2.7484 ( 1 20 28) 0 0.7241 0.9848 11 8 ( 5487 1qxn_A) ( 6088 1urh_A) 0.5340 0.8408 2.9457 ( 1 10 15) 0 0.5340 0.8408 11 6 -------------------------------------------------------------------------------------------------------------------------