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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5635 1rhs  )  (  989 1e0c_A)     0.9999   0.8889   1.4918 (   0   22   28)   0     0.9999   0.8889    8   9
( 5635 1rhs  )  (  990 1e0c_A)     0.9999   0.8889   1.6916 (   0   21   28)   0     0.9999   0.8889    8   9
( 5635 1rhs  )  ( 1878 1gmx_A)     0.9815   0.8785   2.6503 (   1   19   28)   0     0.9815   0.8785    8   9
( 5635 1rhs  )  ( 2348 1hzm_A)     0.6499   0.6499   4.1250 (   1    8   15)   0     0.6499   0.6499    8   8
( 5635 1rhs  )  ( 4688 1okg_A)     0.9999   0.9999   2.3871 (   0   22   28)   0     0.9999   0.9999    8   8
( 5635 1rhs  )  ( 4689 1okg_A)     0.7500   0.8571   2.0597 (   0   10   15)   0     0.7500   0.8571    8   7
( 5635 1rhs  )  ( 5274 1qb0_A)     0.9871   0.8817   3.2743 (   1   21   28)   0     0.9871   0.8817    8   9
( 5635 1rhs  )  ( 5487 1qxn_A)     0.9848   0.7241   2.6875 (   1   20   28)   0     0.9848   0.7241    8  11
( 5635 1rhs  )  ( 5635 1rhs  )     1.0000   1.0000   0.0000 (   0   23   28)   0     1.0000   1.0000    8   8
( 5635 1rhs  )  ( 5636 1rhs  )     0.9999   0.9999   1.5445 (   0   22   28)   0     0.9999   0.9999    8   8
( 5635 1rhs  )  ( 6087 1urh_A)     0.9999   0.9999   1.5806 (   0   23   28)   0     0.9999   0.9999    8   8
( 5635 1rhs  )  ( 6088 1urh_A)     0.7500   0.9999   1.8148 (   0   12   15)   0     0.7500   0.9999    8   6

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