------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6087 1urh_A) ( 989 1e0c_A) 0.9999 0.8889 1.2863 ( 0 22 28) 0 0.9999 0.8889 8 9 ( 6087 1urh_A) ( 990 1e0c_A) 0.9999 0.8889 1.9882 ( 0 21 28) 0 0.9999 0.8889 8 9 ( 6087 1urh_A) ( 1878 1gmx_A) 0.9814 0.8784 3.0177 ( 1 19 28) 0 0.9814 0.8784 8 9 ( 6087 1urh_A) ( 2348 1hzm_A) 0.6249 0.6249 3.6637 ( 0 7 10) 0 0.6249 0.6249 8 8 ( 6087 1urh_A) ( 4688 1okg_A) 0.9999 0.9999 1.9287 ( 0 22 28) 0 0.9999 0.9999 8 8 ( 6087 1urh_A) ( 4689 1okg_A) 0.7500 0.8571 1.9918 ( 0 10 15) 0 0.7500 0.8571 8 7 ( 6087 1urh_A) ( 5274 1qb0_A) 0.8749 0.7777 2.4231 ( 0 18 21) 0 0.8749 0.7777 8 9 ( 6087 1urh_A) ( 5487 1qxn_A) 0.9848 0.7241 2.7484 ( 1 20 28) 0 0.9848 0.7241 8 11 ( 6087 1urh_A) ( 5635 1rhs ) 0.9999 0.9999 1.5806 ( 0 23 28) 0 0.9999 0.9999 8 8 ( 6087 1urh_A) ( 5636 1rhs ) 0.9999 0.9999 1.4633 ( 0 22 28) 0 0.9999 0.9999 8 8 ( 6087 1urh_A) ( 6087 1urh_A) 1.0000 1.0000 0.0000 ( 0 23 28) 0 1.0000 1.0000 8 8 ( 6087 1urh_A) ( 6088 1urh_A) 0.7500 0.9999 1.8363 ( 0 12 15) 0 0.7500 0.9999 8 6 -------------------------------------------------------------------------------------------------------------------------