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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6088 1urh_A)  (  989 1e0c_A)     0.9999   0.6667   2.2268 (   0   11   15)   0     0.9999   0.6667    6   9
( 6088 1urh_A)  (  990 1e0c_A)     0.9999   0.6667   1.9747 (   0   11   15)   0     0.9999   0.6667    6   9
( 6088 1urh_A)  ( 1878 1gmx_A)     0.9946   0.6659   6.1537 (   0   11   15)   0     0.9946   0.6659    6   9
( 6088 1urh_A)  ( 2348 1hzm_A)     0.4665   0.4203   7.5742 (   1    5    6)   0     0.4665   0.4203    6   8
( 6088 1urh_A)  ( 4688 1okg_A)     0.9998   0.7500   2.6469 (   0   12   15)   0     0.9998   0.7500    6   8
( 6088 1urh_A)  ( 4689 1okg_A)     0.6667   0.5714   1.6391 (   0    4    6)   0     0.6667   0.5714    6   7
( 6088 1urh_A)  ( 5274 1qb0_A)     0.8405   0.6372   4.0492 (   1   10   15)   0     0.8405   0.6372    6   9
( 6088 1urh_A)  ( 5487 1qxn_A)     0.8408   0.5340   2.9457 (   1   10   15)   0     0.8408   0.5340    6  11
( 6088 1urh_A)  ( 5635 1rhs  )     0.9999   0.7500   1.8148 (   0   12   15)   0     0.9999   0.7500    6   8
( 6088 1urh_A)  ( 5636 1rhs  )     0.9999   0.7500   0.8733 (   0   12   15)   0     0.9999   0.7500    6   8
( 6088 1urh_A)  ( 6087 1urh_A)     0.9999   0.7500   1.8363 (   0   12   15)   0     0.9999   0.7500    6   8
( 6088 1urh_A)  ( 6088 1urh_A)     1.0000   1.0000   0.0000 (   0   13   15)   0     1.0000   1.0000    6   6

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