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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4878 1p3d_A)  ( 2747 1j6u_A)     0.7468   0.9063   0.8793 (   1   12   21)   0     0.7776   0.9994    9   7
( 4878 1p3d_A)  ( 4878 1p3d_A)     1.0000   1.0000   0.0000 (   0   22   36)   0     1.0000   1.0000    9   9
( 4878 1p3d_A)  ( 6552 2uag_A)     0.9848   0.9848   2.7300 (   1   20   36)   0     0.9848   0.9848    9   9

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