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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2008 1gyt_A)  ( 2008 1gyt_A)     1.0000   1.0000   0.0000 (   0   48   55)   0     1.0000   1.0000   11  11
( 2008 1gyt_A)  ( 3583 1lam  )     0.9079   0.9981   2.7061 (   1   35   45)   0     0.9079   0.9981   11  10
( 2008 1gyt_A)  ( 5837 1spv_A)     0.9975   0.9975   4.4589 (   1   40   55)   0     0.9975   0.9975   11  11
( 2008 1gyt_A)  ( 6246 1vhu_A)     0.9977   0.8451   4.3646 (   1   40   55)   0     0.9977   0.8451   11  13

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