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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 1034 1e4f_T) ( 247 1az9 ) 0.5383 0.4999 5.3501 ( 0 11 21) 0 0.5854 0.5501 13 14
( 1034 1e4f_T) ( 345 1bco ) 0.5383 0.6359 5.8761 ( 0 12 21) 0 0.5383 0.6359 13 11
( 1034 1e4f_T) ( 463 1bu6_O) 0.6139 0.4442 4.1771 ( 1 20 28) 0 0.6139 0.4442 13 18
( 1034 1e4f_T) ( 464 1bu6_O) 0.7192 0.5737 4.0905 ( 3 31 45) 0 0.7192 0.5737 13 17
( 1034 1e4f_T) ( 471 1bup_A) 0.6919 0.5624 5.0623 ( 0 25 36) 0 0.6919 0.5687 13 16
( 1034 1e4f_T) ( 472 1bup_A) 0.8113 0.8666 4.5947 ( 3 39 55) 0 0.8113 0.8666 13 12
( 1034 1e4f_T) ( 592 1chm_A) 0.6138 0.6643 5.0233 ( 1 20 28) 0 0.6138 0.6643 13 12
( 1034 1e4f_T) ( 703 1cxq_A) 0.3068 0.3967 17.0907 ( 0 3 6) 0 0.3077 0.4000 13 10
( 1034 1e4f_T) ( 713 1cza_N) 0.6144 0.7964 3.1513 ( 1 22 28) 0 0.6144 0.7964 13 10
( 1034 1e4f_T) ( 714 1cza_N) 0.6572 0.6301 7.9740 ( 4 32 45) 0 0.6572 0.6301 13 14
( 1034 1e4f_T) ( 934 1dt9_A) 0.5384 0.7774 4.3450 ( 0 15 21) 0 0.5384 0.7774 13 9
( 1034 1e4f_T) ( 1021 1e3m_A) 0.5384 0.7772 4.7968 ( 0 6 21) 0 0.5384 0.7772 13 9
( 1034 1e4f_T) ( 1033 1e4f_T) 0.6153 0.5714 3.8951 ( 0 23 28) 0 0.6153 0.5714 13 14
( 1034 1e4f_T) ( 1034 1e4f_T) 1.0000 1.0000 0.0000 ( 0 67 78) 0 1.0000 1.0000 13 13
( 1034 1e4f_T) ( 1191 1eke_A) 0.6152 0.5713 4.8699 ( 0 21 28) 0 0.6152 0.5713 13 14
( 1034 1e4f_T) ( 1223 1eo1_A) 0.5384 0.8747 3.5286 ( 0 12 21) 0 0.5384 0.8747 13 8
( 1034 1e4f_T) ( 1289 1ewq_A) 0.5384 0.6997 4.6613 ( 0 11 21) 0 0.5384 0.6997 13 10
( 1034 1e4f_T) ( 1305 1exq_A) 0.2975 0.3933 10.2779 ( 1 5 6) 0 0.3077 0.4443 13 9
( 1034 1e4f_T) ( 1522 1fjg_K) 0.5383 0.9972 5.2328 ( 0 11 21) 0 0.5383 0.9972 13 7
( 1034 1e4f_T) ( 1656 1fxx_A) 0.4615 0.1935 4.3343 ( 0 10 15) 0 0.5365 0.2537 13 31
( 1034 1e4f_T) ( 1778 1g99_A) 0.5384 0.6362 4.7705 ( 0 14 21) 0 0.5384 0.6362 13 11
( 1034 1e4f_T) ( 1779 1g99_A) 0.6789 0.5576 4.2802 ( 2 26 36) 0 0.6831 0.5893 13 16
( 1034 1e4f_T) ( 2218 1hjr_A) 0.6151 0.7991 5.2368 ( 0 15 28) 0 0.6151 0.7991 13 10
( 1034 1e4f_T) ( 2296 1hux_A) 0.6142 0.4442 3.4844 ( 1 21 28) 0 0.6142 0.4442 13 18
( 1034 1e4f_T) ( 2378 1i39_A) 0.5384 0.5384 3.6030 ( 0 15 21) 0 0.5384 0.5384 13 13
( 1034 1e4f_T) ( 2483 1ig8_A) 0.6805 0.7921 4.7708 ( 2 27 36) 0 0.6805 0.7921 13 11
( 1034 1e4f_T) ( 2484 1ig8_A) 0.7594 0.6618 6.6901 ( 2 34 45) 0 0.7594 0.6618 13 15
( 1034 1e4f_T) ( 2491 1ih7_A) 0.6148 0.2963 6.4313 ( 0 18 28) 0 0.6148 0.2963 13 27
( 1034 1e4f_T) ( 2619 1iv0_A) 0.5345 0.9262 4.9341 ( 1 13 21) 0 0.5345 0.9262 13 7
( 1034 1e4f_T) ( 2733 1j54_A) 0.6130 0.6631 6.8254 ( 1 19 28) 0 0.6130 0.6631 13 12
( 1034 1e4f_T) ( 2775 1j9a_A) 0.4614 0.4285 6.0472 ( 0 9 15) 0 0.4614 0.4454 13 14
( 1034 1e4f_T) ( 2821 1jce_A) 0.6916 0.7489 5.8818 ( 0 24 36) 0 0.6916 0.7489 13 12
( 1034 1e4f_T) ( 2822 1jce_A) 0.9196 0.7983 2.4193 ( 2 53 66) 0 0.9196 0.7983 13 15
( 1034 1e4f_T) ( 2910 1jj2_M) 0.3763 0.4363 5.2170 ( 1 7 10) 0 0.3763 0.4363 13 11
( 1034 1e4f_T) ( 2954 1jl1_A) 0.5381 0.6987 6.7058 ( 0 9 21) 0 0.5381 0.6987 13 10
( 1034 1e4f_T) ( 3210 1k8k_A) 0.8366 0.6841 6.8499 ( 2 41 55) 0 0.8366 0.6841 13 16
( 1034 1e4f_T) ( 3260 1kcf_A) 0.6132 0.6634 4.3147 ( 1 18 28) 0 0.6132 0.6634 13 12
( 1034 1e4f_T) ( 3286 1kfs_A) 0.5384 0.5833 3.9548 ( 0 14 21) 0 0.5384 0.5833 13 12
( 1034 1e4f_T) ( 3925 1mgt_A) nil
( 1034 1e4f_T) ( 4043 1mus_A) 0.5904 0.2956 6.6336 ( 2 19 28) 0 0.6109 0.2962 13 27
( 1034 1e4f_T) ( 4057 1mwm_A) 0.6830 0.7974 5.6267 ( 2 29 36) 0 0.6830 0.7974 13 11
( 1034 1e4f_T) ( 4058 1mwm_A) 0.6789 0.7887 3.6754 ( 2 26 36) 0 0.6789 0.7887 13 11
( 1034 1e4f_T) ( 4191 1nbw_A) 0.3076 0.2222 8.6672 ( 0 5 6) 0 0.6669 0.5298 13 18
( 1034 1e4f_T) ( 4193 1nbw_A) 0.7618 0.6224 4.3922 ( 2 35 45) 0 0.7618 0.6658 13 16
( 1034 1e4f_T) ( 4281 1nk4_A) 0.5331 0.5754 4.0692 ( 1 12 21) 0 0.5331 0.5754 13 12
( 1034 1e4f_T) ( 4391 1nu0_A) 0.5381 0.8715 6.5227 ( 0 13 21) 0 0.5381 0.8715 13 8
( 1034 1e4f_T) ( 4469 1o13_A) 0.5384 0.8746 3.8288 ( 0 14 21) 0 0.5384 0.8746 13 8
( 1034 1e4f_T) ( 4935 1p90_A) 0.6136 0.7933 4.5373 ( 1 19 28) 0 0.6152 0.7994 13 10
( 1034 1e4f_T) ( 5120 1pv9_A) 0.3077 0.3333 7.8639 ( 0 3 6) 0 0.6136 0.6640 13 12
( 1034 1e4f_T) ( 5243 1q8i_A) 0.6149 0.2857 6.2465 ( 0 17 28) 0 0.6149 0.2857 13 28
( 1034 1e4f_T) ( 5447 1qtm_A) 0.3696 0.4829 10.3917 ( 1 6 10) 0 0.3844 0.5542 13 9
( 1034 1e4f_T) ( 5500 1qz5_A) 0.6895 0.8119 7.1638 ( 1 24 36) 0 0.6895 0.8119 13 11
( 1034 1e4f_T) ( 5501 1qz5_A) 0.7622 0.5913 5.2375 ( 4 40 55) 0 0.7622 0.5913 13 18
( 1034 1e4f_T) ( 5883 1t7p_A) 0.3077 0.3333 6.0012 ( 0 4 6) 0 0.4074 0.4171 13 12
( 1034 1e4f_T) ( 5906 1tgo_A) 0.4615 0.2222 5.5588 ( 0 12 15) 0 0.4615 0.2410 13 27
( 1034 1e4f_T) ( 6064 1uoc_A) 0.3846 0.2941 6.1212 ( 0 7 10) 0 0.5365 0.4451 13 17
( 1034 1e4f_T) ( 6249 1vhx_A) 0.5382 0.6990 6.2552 ( 0 13 21) 0 0.5382 0.6990 13 10
( 1034 1e4f_T) ( 6299 1vk0_A) 0.5330 0.4640 5.0634 ( 1 12 21) 0 0.5330 0.4640 13 15
( 1034 1e4f_T) ( 6323 1vrt_A) 0.5223 0.7450 5.7604 ( 1 9 21) 0 0.5223 0.7494 13 8
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