------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1778 1g99_A) ( 247 1az9 ) 0.7271 0.5714 3.7759 ( 0 16 28) 0 0.7271 0.5714 11 14 ( 1778 1g99_A) ( 345 1bco ) 0.4545 0.4545 4.8053 ( 0 6 10) 0 0.6360 0.6360 11 11 ( 1778 1g99_A) ( 463 1bu6_O) 0.4545 0.2778 4.7541 ( 0 5 10) 0 0.7269 0.4444 11 18 ( 1778 1g99_A) ( 464 1bu6_O) 0.3636 0.2353 3.3068 ( 0 4 6) 0 0.4929 0.3456 11 17 ( 1778 1g99_A) ( 471 1bup_A) 0.6362 0.4375 4.7271 ( 0 14 21) 0 0.6362 0.4375 11 16 ( 1778 1g99_A) ( 472 1bup_A) 0.4545 0.4167 4.1872 ( 0 5 10) 0 0.4545 0.4167 11 12 ( 1778 1g99_A) ( 592 1chm_A) 0.4545 0.4167 3.7259 ( 0 2 10) 0 0.4545 0.4167 11 12 ( 1778 1g99_A) ( 703 1cxq_A) 0.4545 0.5000 4.4585 ( 0 7 10) 0 0.6362 0.6997 11 10 ( 1778 1g99_A) ( 713 1cza_N) 0.5454 0.6000 3.5204 ( 0 10 15) 0 0.5454 0.6000 11 10 ( 1778 1g99_A) ( 714 1cza_N) 0.3635 0.2857 7.8983 ( 0 3 6) 0 0.3635 0.2857 11 14 ( 1778 1g99_A) ( 934 1dt9_A) 0.6363 0.7775 4.0932 ( 0 13 21) 0 0.6363 0.7775 11 9 ( 1778 1g99_A) ( 1021 1e3m_A) 0.4545 0.5555 4.3869 ( 0 4 10) 0 0.4545 0.5555 11 9 ( 1778 1g99_A) ( 1033 1e4f_T) 0.7265 0.5712 5.5600 ( 0 16 28) 0 0.7265 0.5712 11 14 ( 1778 1g99_A) ( 1034 1e4f_T) 0.6362 0.5384 4.7705 ( 0 14 21) 0 0.6362 0.5384 11 13 ( 1778 1g99_A) ( 1191 1eke_A) 0.6361 0.4999 4.8525 ( 0 13 21) 0 0.6361 0.4999 11 14 ( 1778 1g99_A) ( 1223 1eo1_A) 0.6362 0.8744 4.1462 ( 0 11 21) 0 0.6362 0.8744 11 8 ( 1778 1g99_A) ( 1289 1ewq_A) 0.3636 0.3999 6.5055 ( 0 1 6) 0 0.6362 0.6998 11 10 ( 1778 1g99_A) ( 1305 1exq_A) 0.4545 0.5554 5.1202 ( 0 7 10) 0 0.5453 0.6663 11 9 ( 1778 1g99_A) ( 1522 1fjg_K) 0.4545 0.7139 4.6774 ( 0 4 10) 0 0.5442 0.8455 11 7 ( 1778 1g99_A) ( 1656 1fxx_A) 0.7219 0.2580 5.4155 ( 1 18 28) 0 0.7219 0.2580 11 31 ( 1778 1g99_A) ( 1778 1g99_A) 1.0000 1.0000 0.0000 ( 0 41 55) 0 1.0000 1.0000 11 11 ( 1778 1g99_A) ( 1779 1g99_A) 0.5585 0.4222 5.7164 ( 2 14 21) 0 0.7267 0.4999 11 16 ( 1778 1g99_A) ( 2218 1hjr_A) 0.6531 0.6919 4.3797 ( 2 17 28) 0 0.6531 0.6999 11 10 ( 1778 1g99_A) ( 2296 1hux_A) 0.4545 0.2778 4.8738 ( 0 6 10) 0 0.7256 0.4443 11 18 ( 1778 1g99_A) ( 2378 1i39_A) 0.6362 0.5384 4.3076 ( 0 13 21) 0 0.6363 0.5384 11 13 ( 1778 1g99_A) ( 2483 1ig8_A) 0.6363 0.6363 3.9677 ( 0 14 21) 0 0.6363 0.6363 11 11 ( 1778 1g99_A) ( 2484 1ig8_A) 0.3635 0.2666 7.7613 ( 0 3 6) 0 0.4374 0.3671 11 15 ( 1778 1g99_A) ( 2491 1ih7_A) 0.6362 0.2593 4.4468 ( 0 14 21) 0 0.6362 0.2783 11 27 ( 1778 1g99_A) ( 2619 1iv0_A) 0.4545 0.7139 4.7277 ( 0 4 10) 0 0.6242 0.9052 11 7 ( 1778 1g99_A) ( 2733 1j54_A) 0.6650 0.6238 5.6695 ( 2 18 28) 0 0.6650 0.6238 11 12 ( 1778 1g99_A) ( 2775 1j9a_A) 0.6652 0.5502 5.0058 ( 2 18 28) 0 0.6652 0.5502 11 14 ( 1778 1g99_A) ( 2821 1jce_A) 0.4545 0.4166 4.7830 ( 0 6 10) 0 0.8876 0.8192 11 12 ( 1778 1g99_A) ( 2822 1jce_A) 0.6362 0.4666 4.4259 ( 0 14 21) 0 0.7265 0.5332 11 15 ( 1778 1g99_A) ( 2910 1jj2_M) 0.5454 0.5454 4.1273 ( 0 9 15) 0 0.6356 0.6356 11 11 ( 1778 1g99_A) ( 2954 1jl1_A) 0.4545 0.4999 5.7500 ( 0 5 10) 0 0.6359 0.6992 11 10 ( 1778 1g99_A) ( 3210 1k8k_A) 0.4545 0.3125 5.7864 ( 0 4 10) 0 0.4545 0.3125 11 16 ( 1778 1g99_A) ( 3260 1kcf_A) 0.6652 0.6240 4.6985 ( 2 18 28) 0 0.6652 0.6240 11 12 ( 1778 1g99_A) ( 3286 1kfs_A) 0.6361 0.5832 5.0116 ( 0 12 21) 0 0.6361 0.5832 11 12 ( 1778 1g99_A) ( 3925 1mgt_A) 0.3636 0.6659 6.3242 ( 0 2 6) 0 0.3636 0.6659 11 6 ( 1778 1g99_A) ( 4043 1mus_A) 0.4544 0.1852 6.0131 ( 0 5 10) 0 0.4544 0.2803 11 27 ( 1778 1g99_A) ( 4057 1mwm_A) 0.5454 0.5454 3.9633 ( 0 8 15) 0 0.5454 0.5454 11 11 ( 1778 1g99_A) ( 4058 1mwm_A) 0.3634 0.3634 9.5973 ( 0 3 6) 0 0.6812 0.6812 11 11 ( 1778 1g99_A) ( 4191 1nbw_A) 0.4545 0.2778 4.6410 ( 0 6 10) 0 0.4545 0.3169 11 18 ( 1778 1g99_A) ( 4193 1nbw_A) 0.4545 0.3125 5.2231 ( 0 5 10) 0 0.5185 0.4110 11 16 ( 1778 1g99_A) ( 4281 1nk4_A) 0.4543 0.4165 7.5384 ( 0 5 10) 0 0.4543 0.4165 11 12 ( 1778 1g99_A) ( 4391 1nu0_A) 0.6363 0.8749 2.8852 ( 0 11 21) 0 0.6363 0.8749 11 8 ( 1778 1g99_A) ( 4469 1o13_A) 0.3636 0.4999 4.8946 ( 0 4 6) 0 0.6361 0.8736 11 8 ( 1778 1g99_A) ( 4935 1p90_A) 0.6362 0.6998 4.1469 ( 0 13 21) 0 0.6362 0.6998 11 10 ( 1778 1g99_A) ( 5120 1pv9_A) 0.4545 0.4167 3.6343 ( 0 3 10) 0 0.5445 0.4994 11 12 ( 1778 1g99_A) ( 5243 1q8i_A) 0.4545 0.1786 4.5652 ( 0 7 10) 0 0.5584 0.2628 11 28 ( 1778 1g99_A) ( 5447 1qtm_A) 0.3990 0.4407 6.1722 ( 1 5 10) 0 0.3990 0.4442 11 9 ( 1778 1g99_A) ( 5500 1qz5_A) 0.7232 0.7232 4.2765 ( 1 19 28) 0 0.7232 0.7232 11 11 ( 1778 1g99_A) ( 5501 1qz5_A) 0.3636 0.2222 6.4530 ( 0 1 6) 0 0.5841 0.3835 11 18 ( 1778 1g99_A) ( 5883 1t7p_A) 0.6274 0.5775 4.6448 ( 1 13 21) 0 0.6274 0.5775 11 12 ( 1778 1g99_A) ( 5906 1tgo_A) 0.4544 0.1852 7.1512 ( 0 4 10) 0 0.4544 0.2261 11 27 ( 1778 1g99_A) ( 6064 1uoc_A) 0.6362 0.4117 4.3610 ( 0 13 21) 0 0.6362 0.4117 11 17 ( 1778 1g99_A) ( 6249 1vhx_A) 0.6363 0.7000 2.9503 ( 0 12 21) 0 0.6363 0.7000 11 10 ( 1778 1g99_A) ( 6299 1vk0_A) 0.4542 0.3333 8.0818 ( 0 3 10) 0 0.7193 0.5316 11 15 ( 1778 1g99_A) ( 6323 1vrt_A) 0.6361 0.8736 5.2206 ( 0 12 21) 0 0.6361 0.8736 11 8 -------------------------------------------------------------------------------------------------------------------------