------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1779 1g99_A) ( 247 1az9 ) 0.6243 0.7129 6.6744 ( 0 29 45) 0 0.6243 0.7129 16 14 ( 1779 1g99_A) ( 345 1bco ) 0.3123 0.4531 11.8354 ( 0 5 10) 0 0.3736 0.5364 16 11 ( 1779 1g99_A) ( 463 1bu6_O) 0.3113 0.2771 8.7691 ( 1 9 10) 0 0.3749 0.3333 16 18 ( 1779 1g99_A) ( 464 1bu6_O) 0.6557 0.6230 6.5256 ( 4 41 55) 0 0.6557 0.6230 16 17 ( 1779 1g99_A) ( 471 1bup_A) 0.6123 0.6123 6.1373 ( 3 35 45) 0 0.6123 0.6123 16 16 ( 1779 1g99_A) ( 472 1bup_A) 0.5276 0.6369 6.0868 ( 3 23 36) 0 0.5276 0.6611 16 12 ( 1779 1g99_A) ( 592 1chm_A) 0.5622 0.7486 6.2684 ( 0 27 36) 0 0.5622 0.7486 16 12 ( 1779 1g99_A) ( 703 1cxq_A) 0.2500 0.3999 7.3319 ( 0 4 6) 0 0.4944 0.7486 16 10 ( 1779 1g99_A) ( 713 1cza_N) 0.4924 0.7336 5.2296 ( 2 20 28) 0 0.4924 0.7336 16 10 ( 1779 1g99_A) ( 714 1cza_N) 0.6586 0.7330 5.8014 ( 4 42 55) 0 0.6586 0.7330 16 14 ( 1779 1g99_A) ( 934 1dt9_A) 0.2500 0.4439 9.7179 ( 0 4 6) 0 0.5428 0.7928 16 9 ( 1779 1g99_A) ( 1021 1e3m_A) 0.0994 0.0999 9.2745 ( 1 1 6) 0 0.5000 0.8882 16 9 ( 1779 1g99_A) ( 1033 1e4f_T) 0.4994 0.5702 6.0246 ( 1 20 28) 0 0.4994 0.5702 16 14 ( 1779 1g99_A) ( 1034 1e4f_T) 0.6111 0.7326 5.0604 ( 3 34 45) 0 0.6111 0.7326 16 13 ( 1779 1g99_A) ( 1191 1eke_A) 0.3718 0.4224 11.3503 ( 1 9 15) 0 0.3796 0.4224 16 14 ( 1779 1g99_A) ( 1223 1eo1_A) 0.2499 0.4980 11.3784 ( 0 5 6) 0 0.5000 0.9993 16 8 ( 1779 1g99_A) ( 1289 1ewq_A) 0.2500 0.3998 8.0093 ( 0 2 6) 0 0.5624 0.8995 16 10 ( 1779 1g99_A) ( 1305 1exq_A) 0.2500 0.4442 8.1082 ( 0 4 6) 0 0.3748 0.6625 16 9 ( 1779 1g99_A) ( 1522 1fjg_K) 0.4375 0.9977 4.9640 ( 0 11 21) 0 0.4375 0.9977 16 7 ( 1779 1g99_A) ( 1656 1fxx_A) 0.4374 0.2258 5.9873 ( 0 13 21) 0 0.4998 0.2581 16 31 ( 1779 1g99_A) ( 1778 1g99_A) 0.4222 0.5585 5.7164 ( 2 14 21) 0 0.4999 0.7267 16 11 ( 1779 1g99_A) ( 1779 1g99_A) 1.0000 1.0000 0.0000 ( 0 105 120) 0 1.0000 1.0000 16 16 ( 1779 1g99_A) ( 2218 1hjr_A) 0.2499 0.3991 12.2090 ( 0 2 6) 0 0.5623 0.8984 16 10 ( 1779 1g99_A) ( 2296 1hux_A) 0.3124 0.2777 8.6025 ( 0 8 10) 0 0.4240 0.4115 16 18 ( 1779 1g99_A) ( 2378 1i39_A) 0.2500 0.3077 5.0188 ( 0 4 6) 0 0.5213 0.5963 16 13 ( 1779 1g99_A) ( 2483 1ig8_A) 0.4999 0.7267 5.2616 ( 0 20 28) 0 0.4999 0.7267 16 11 ( 1779 1g99_A) ( 2484 1ig8_A) 0.5860 0.6151 5.0129 ( 4 34 45) 0 0.5860 0.6151 16 15 ( 1779 1g99_A) ( 2491 1ih7_A) 0.3750 0.2222 5.2938 ( 0 10 15) 0 0.5394 0.3315 16 27 ( 1779 1g99_A) ( 2619 1iv0_A) 0.4355 0.9047 5.1453 ( 1 12 21) 0 0.4355 0.9047 16 7 ( 1779 1g99_A) ( 2733 1j54_A) 0.3005 0.3131 5.9822 ( 5 16 21) 0 0.5572 0.7287 16 12 ( 1779 1g99_A) ( 2775 1j9a_A) 0.3107 0.3536 8.4437 ( 1 8 10) 0 0.5581 0.6345 16 14 ( 1779 1g99_A) ( 2821 1jce_A) 0.5617 0.7468 6.3274 ( 1 24 36) 0 0.5617 0.7468 16 12 ( 1779 1g99_A) ( 2822 1jce_A) 0.6220 0.6625 4.7965 ( 2 34 45) 0 0.6220 0.6625 16 15 ( 1779 1g99_A) ( 2910 1jj2_M) 0.2500 0.3634 9.7031 ( 0 3 6) 0 0.2528 0.3634 16 11 ( 1779 1g99_A) ( 2954 1jl1_A) 0.4355 0.6804 5.9558 ( 1 12 21) 0 0.4355 0.6804 16 10 ( 1779 1g99_A) ( 3210 1k8k_A) 0.4871 0.4871 8.0673 ( 4 24 36) 0 0.4871 0.4871 16 16 ( 1779 1g99_A) ( 3260 1kcf_A) 0.3125 0.4166 5.5519 ( 0 3 10) 0 0.5623 0.7491 16 12 ( 1779 1g99_A) ( 3286 1kfs_A) 0.2500 0.3331 10.6110 ( 0 3 6) 0 0.5560 0.7242 16 12 ( 1779 1g99_A) ( 3925 1mgt_A) 0.2500 0.6648 7.7916 ( 0 2 6) 0 0.2500 0.6648 16 6 ( 1779 1g99_A) ( 4043 1mus_A) 0.3721 0.2220 7.9044 ( 1 9 15) 0 0.4351 0.3227 16 27 ( 1779 1g99_A) ( 4057 1mwm_A) 0.4718 0.5994 5.0769 ( 3 21 28) 0 0.4718 0.5994 16 11 ( 1779 1g99_A) ( 4058 1mwm_A) 0.6023 0.7946 7.3179 ( 3 30 45) 0 0.6025 0.8169 16 11 ( 1779 1g99_A) ( 4191 1nbw_A) 0.2500 0.2222 9.6897 ( 0 5 6) 0 0.2500 0.2222 16 18 ( 1779 1g99_A) ( 4193 1nbw_A) 0.5582 0.5582 4.8914 ( 2 27 36) 0 0.5582 0.5582 16 16 ( 1779 1g99_A) ( 4281 1nk4_A) 0.2500 0.3332 10.2071 ( 0 3 6) 0 0.2524 0.3332 16 12 ( 1779 1g99_A) ( 4391 1nu0_A) 0.2102 0.2462 9.7971 ( 2 5 6) 0 0.4998 0.9940 16 8 ( 1779 1g99_A) ( 4469 1o13_A) 0.2412 0.3665 12.2926 ( 1 4 6) 0 0.5000 0.9988 16 8 ( 1779 1g99_A) ( 4935 1p90_A) 0.2500 0.3998 8.4690 ( 0 2 6) 0 0.5624 0.8991 16 10 ( 1779 1g99_A) ( 5120 1pv9_A) 0.5623 0.7490 5.8301 ( 0 25 36) 0 0.5623 0.7490 16 12 ( 1779 1g99_A) ( 5243 1q8i_A) 0.3095 0.1784 5.9024 ( 1 7 10) 0 0.4993 0.2857 16 28 ( 1779 1g99_A) ( 5447 1qtm_A) 0.2572 0.2939 9.6338 ( 2 6 10) 0 0.2572 0.3930 16 9 ( 1779 1g99_A) ( 5500 1qz5_A) 0.4991 0.7218 5.5804 ( 1 18 28) 0 0.4991 0.7218 16 11 ( 1779 1g99_A) ( 5501 1qz5_A) 0.3212 0.3085 6.4337 ( 4 14 21) 0 0.3737 0.3326 16 18 ( 1779 1g99_A) ( 5883 1t7p_A) 0.2499 0.3330 11.7213 ( 0 5 6) 0 0.4718 0.5798 16 12 ( 1779 1g99_A) ( 5906 1tgo_A) 0.3095 0.1850 5.9210 ( 1 7 10) 0 0.4992 0.2962 16 27 ( 1779 1g99_A) ( 6064 1uoc_A) 0.3107 0.2927 8.3458 ( 1 8 10) 0 0.5359 0.5093 16 17 ( 1779 1g99_A) ( 6249 1vhx_A) 0.3095 0.4717 6.6167 ( 1 7 10) 0 0.5623 0.8980 16 10 ( 1779 1g99_A) ( 6299 1vk0_A) 0.2462 0.2615 7.8313 ( 1 5 6) 0 0.2887 0.3021 16 15 ( 1779 1g99_A) ( 6323 1vrt_A) 0.4356 0.8216 4.5000 ( 1 12 21) 0 0.4356 0.8216 16 8 -------------------------------------------------------------------------------------------------------------------------