------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2218 1hjr_A) ( 247 1az9 ) 0.4998 0.3571 6.4487 ( 0 6 10) 0 0.9930 0.7130 10 14 ( 2218 1hjr_A) ( 345 1bco ) 0.6986 0.6355 6.8074 ( 0 9 21) 0 0.6986 0.6355 10 11 ( 2218 1hjr_A) ( 463 1bu6_O) 0.6725 0.4344 4.6537 ( 2 16 28) 0 0.6725 0.4344 10 18 ( 2218 1hjr_A) ( 464 1bu6_O) 0.4000 0.2353 5.4924 ( 0 3 6) 0 0.8642 0.5267 10 17 ( 2218 1hjr_A) ( 471 1bup_A) 0.7989 0.4999 5.4542 ( 0 16 28) 0 0.7989 0.4999 10 16 ( 2218 1hjr_A) ( 472 1bup_A) 0.6810 0.5754 3.5545 ( 1 12 21) 0 0.6810 0.5754 10 12 ( 2218 1hjr_A) ( 592 1chm_A) 0.5982 0.4993 8.8236 ( 0 9 15) 0 0.9945 0.8311 10 12 ( 2218 1hjr_A) ( 703 1cxq_A) 0.4991 0.4991 9.3071 ( 0 7 10) 0 0.4991 0.4991 10 10 ( 2218 1hjr_A) ( 713 1cza_N) 0.7083 0.7083 4.5859 ( 2 18 28) 0 0.7083 0.7083 10 10 ( 2218 1hjr_A) ( 714 1cza_N) 0.7841 0.5684 9.1807 ( 1 18 28) 0 0.7841 0.5684 10 14 ( 2218 1hjr_A) ( 934 1dt9_A) 0.7994 0.8879 4.6616 ( 0 18 28) 0 0.7994 0.8879 10 9 ( 2218 1hjr_A) ( 1021 1e3m_A) 0.8823 0.9707 4.5450 ( 1 17 36) 0 0.8823 0.9707 10 9 ( 2218 1hjr_A) ( 1033 1e4f_T) 0.7992 0.5713 4.9790 ( 0 16 28) 0 0.7992 0.5713 10 14 ( 2218 1hjr_A) ( 1034 1e4f_T) 0.7991 0.6151 5.2368 ( 0 15 28) 0 0.7991 0.6151 10 13 ( 2218 1hjr_A) ( 1191 1eke_A) 0.4000 0.2857 4.9749 ( 0 2 6) 0 0.4000 0.2945 10 14 ( 2218 1hjr_A) ( 1223 1eo1_A) 0.7994 0.9982 4.6571 ( 0 18 28) 0 0.7994 0.9982 10 8 ( 2218 1hjr_A) ( 1289 1ewq_A) 0.7996 0.7996 4.2899 ( 0 17 28) 0 0.7996 0.7996 10 10 ( 2218 1hjr_A) ( 1305 1exq_A) 0.5995 0.6658 6.3889 ( 0 7 15) 0 0.5995 0.6658 10 9 ( 2218 1hjr_A) ( 1522 1fjg_K) 0.6997 0.9981 4.7531 ( 0 11 21) 0 0.6997 0.9981 10 7 ( 2218 1hjr_A) ( 1656 1fxx_A) 0.7987 0.2581 5.7072 ( 0 20 28) 0 0.7987 0.2581 10 31 ( 2218 1hjr_A) ( 1778 1g99_A) 0.6999 0.6363 3.3303 ( 0 10 21) 0 0.6999 0.6531 10 11 ( 2218 1hjr_A) ( 1779 1g99_A) 0.3991 0.2499 12.2090 ( 0 2 6) 0 0.8984 0.5623 10 16 ( 2218 1hjr_A) ( 2218 1hjr_A) 1.0000 1.0000 0.0000 ( 0 34 45) 0 1.0000 1.0000 10 10 ( 2218 1hjr_A) ( 2296 1hux_A) 0.7995 0.4444 4.4021 ( 0 20 28) 0 0.7995 0.4444 10 18 ( 2218 1hjr_A) ( 2378 1i39_A) 0.4000 0.3077 4.3584 ( 0 2 6) 0 0.4717 0.3762 10 13 ( 2218 1hjr_A) ( 2483 1ig8_A) 0.7995 0.7269 4.5471 ( 0 13 28) 0 0.7995 0.7269 10 11 ( 2218 1hjr_A) ( 2484 1ig8_A) 0.7974 0.5330 6.7646 ( 0 14 28) 0 0.7974 0.5330 10 15 ( 2218 1hjr_A) ( 2491 1ih7_A) 0.7988 0.2963 5.5151 ( 0 18 28) 0 0.7988 0.2963 10 27 ( 2218 1hjr_A) ( 2619 1iv0_A) 0.6807 0.9049 4.9602 ( 1 12 21) 0 0.6807 0.9049 10 7 ( 2218 1hjr_A) ( 2733 1j54_A) 0.8948 0.7479 6.9702 ( 0 22 36) 0 0.8948 0.7479 10 12 ( 2218 1hjr_A) ( 2775 1j9a_A) 0.6994 0.4999 5.5907 ( 0 14 21) 0 0.6994 0.5451 10 14 ( 2218 1hjr_A) ( 2821 1jce_A) 0.7902 0.6627 3.8785 ( 1 17 28) 0 0.7902 0.6627 10 12 ( 2218 1hjr_A) ( 2822 1jce_A) 0.7994 0.5333 4.7011 ( 0 15 28) 0 0.7994 0.5333 10 15 ( 2218 1hjr_A) ( 2910 1jj2_M) 0.4000 0.3636 4.4193 ( 0 5 6) 0 0.5598 0.5192 10 11 ( 2218 1hjr_A) ( 2954 1jl1_A) 0.5997 0.5997 5.6568 ( 0 7 15) 0 0.5997 0.5997 10 10 ( 2218 1hjr_A) ( 3210 1k8k_A) 0.3998 0.2500 8.1890 ( 0 1 6) 0 0.3998 0.2500 10 16 ( 2218 1hjr_A) ( 3260 1kcf_A) 0.9987 0.8328 4.3336 ( 0 29 45) 0 0.9987 0.8328 10 12 ( 2218 1hjr_A) ( 3286 1kfs_A) 0.8461 0.7266 5.7873 ( 2 25 36) 0 0.8461 0.7266 10 12 ( 2218 1hjr_A) ( 3925 1mgt_A) 0.1970 0.1996 13.6031 ( 2 4 6) 1 0.1970 0.1996 10 6 ( 2218 1hjr_A) ( 4043 1mus_A) 0.6468 0.2588 6.4138 ( 1 9 21) 0 0.6468 0.2588 10 27 ( 2218 1hjr_A) ( 4057 1mwm_A) 0.6996 0.6361 4.8470 ( 0 12 21) 0 0.6996 0.6361 10 11 ( 2218 1hjr_A) ( 4058 1mwm_A) 0.4998 0.4544 6.3903 ( 0 7 10) 0 0.7991 0.7267 10 11 ( 2218 1hjr_A) ( 4191 1nbw_A) 0.7993 0.4444 4.8898 ( 0 14 28) 0 0.7993 0.4444 10 18 ( 2218 1hjr_A) ( 4193 1nbw_A) 0.6910 0.4859 6.5891 ( 2 17 28) 0 0.6910 0.4859 10 16 ( 2218 1hjr_A) ( 4281 1nk4_A) 0.7927 0.6637 5.5286 ( 1 19 28) 0 0.7927 0.6637 10 12 ( 2218 1hjr_A) ( 4391 1nu0_A) 0.7996 0.9987 4.2685 ( 0 19 28) 0 0.7996 0.9987 10 8 ( 2218 1hjr_A) ( 4469 1o13_A) 0.7945 0.9835 4.5110 ( 1 20 28) 0 0.7945 0.9835 10 8 ( 2218 1hjr_A) ( 4935 1p90_A) 0.7996 0.7996 4.3399 ( 0 19 28) 0 0.7996 0.7996 10 10 ( 2218 1hjr_A) ( 5120 1pv9_A) 0.4201 0.3774 9.2505 ( 1 5 10) 0 0.9936 0.8307 10 12 ( 2218 1hjr_A) ( 5243 1q8i_A) 0.8289 0.3209 6.1838 ( 2 23 36) 0 0.8289 0.3209 10 28 ( 2218 1hjr_A) ( 5447 1qtm_A) 0.6789 0.7434 7.8838 ( 1 12 21) 0 0.6789 0.7434 10 9 ( 2218 1hjr_A) ( 5500 1qz5_A) 0.7874 0.7194 4.6055 ( 1 16 28) 0 0.7874 0.7194 10 11 ( 2218 1hjr_A) ( 5501 1qz5_A) 0.3990 0.2222 12.8243 ( 0 2 6) 0 0.3990 0.2222 10 18 ( 2218 1hjr_A) ( 5883 1t7p_A) 0.7329 0.6366 6.3767 ( 2 20 28) 0 0.7329 0.6366 10 12 ( 2218 1hjr_A) ( 5906 1tgo_A) 0.8937 0.3333 5.8493 ( 1 25 36) 0 0.9821 0.3702 10 27 ( 2218 1hjr_A) ( 6064 1uoc_A) 0.8963 0.5292 6.3645 ( 0 20 36) 0 0.8963 0.5370 10 17 ( 2218 1hjr_A) ( 6249 1vhx_A) 0.7994 0.7994 4.6760 ( 0 18 28) 0 0.7994 0.7994 10 10 ( 2218 1hjr_A) ( 6299 1vk0_A) 0.6890 0.4652 5.3531 ( 1 14 21) 0 0.6890 0.4816 10 15 ( 2218 1hjr_A) ( 6323 1vrt_A) 0.6989 0.8716 6.4729 ( 0 7 21) 0 0.6989 0.8716 10 8 -------------------------------------------------------------------------------------------------------------------------