------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2296 1hux_A) ( 247 1az9 ) 0.3889 0.5000 3.8277 ( 0 15 21) 0 0.4440 0.5699 18 14 ( 2296 1hux_A) ( 345 1bco ) 0.3332 0.5439 9.6231 ( 0 9 15) 0 0.3883 0.6300 18 11 ( 2296 1hux_A) ( 463 1bu6_O) 0.3889 0.3889 3.6067 ( 0 13 21) 0 0.4995 0.4995 18 18 ( 2296 1hux_A) ( 464 1bu6_O) 0.5478 0.5780 3.1325 ( 3 34 45) 0 0.5478 0.5780 18 17 ( 2296 1hux_A) ( 471 1bup_A) 0.4718 0.5154 5.5011 ( 4 28 36) 0 0.4718 0.5154 18 16 ( 2296 1hux_A) ( 472 1bup_A) 0.4868 0.6697 7.1067 ( 3 26 36) 0 0.4868 0.6697 18 12 ( 2296 1hux_A) ( 592 1chm_A) 0.4444 0.6662 5.6463 ( 0 20 28) 0 0.4444 0.6662 18 12 ( 2296 1hux_A) ( 703 1cxq_A) 0.3333 0.5999 4.2784 ( 0 10 15) 0 0.3333 0.5999 18 10 ( 2296 1hux_A) ( 713 1cza_N) 0.3889 0.6998 4.1637 ( 0 14 21) 0 0.3889 0.6998 18 10 ( 2296 1hux_A) ( 714 1cza_N) 0.3875 0.4951 10.1614 ( 1 12 21) 0 0.4645 0.5097 18 14 ( 2296 1hux_A) ( 934 1dt9_A) 0.3889 0.7770 5.1613 ( 0 15 21) 0 0.4280 0.7770 18 9 ( 2296 1hux_A) ( 1021 1e3m_A) 0.4438 0.8683 4.2770 ( 1 16 28) 0 0.4438 0.8683 18 9 ( 2296 1hux_A) ( 1033 1e4f_T) 0.3889 0.5000 3.4473 ( 0 16 21) 0 0.4407 0.5587 18 14 ( 2296 1hux_A) ( 1034 1e4f_T) 0.4442 0.6142 3.4844 ( 1 21 28) 0 0.4442 0.6142 18 13 ( 2296 1hux_A) ( 1191 1eke_A) 0.2778 0.3571 3.9415 ( 0 6 10) 0 0.3671 0.3862 18 14 ( 2296 1hux_A) ( 1223 1eo1_A) 0.3889 0.8743 4.3162 ( 0 14 21) 0 0.3889 0.8745 18 8 ( 2296 1hux_A) ( 1289 1ewq_A) 0.3889 0.6998 4.2627 ( 0 11 21) 0 0.4364 0.6998 18 10 ( 2296 1hux_A) ( 1305 1exq_A) 0.2778 0.5555 4.2373 ( 0 6 10) 0 0.2778 0.5555 18 9 ( 2296 1hux_A) ( 1522 1fjg_K) 0.3333 0.8569 3.3395 ( 0 7 15) 0 0.3333 0.8569 18 7 ( 2296 1hux_A) ( 1656 1fxx_A) 0.2769 0.1612 13.4111 ( 1 9 10) 0 0.4203 0.2826 18 31 ( 2296 1hux_A) ( 1778 1g99_A) 0.2778 0.4545 4.8738 ( 0 6 10) 0 0.4443 0.7256 18 11 ( 2296 1hux_A) ( 1779 1g99_A) 0.2777 0.3124 8.6025 ( 0 8 10) 0 0.4998 0.5622 18 16 ( 2296 1hux_A) ( 2218 1hjr_A) 0.4444 0.7995 4.4021 ( 0 20 28) 0 0.4444 0.7995 18 10 ( 2296 1hux_A) ( 2296 1hux_A) 1.0000 1.0000 0.0000 ( 0 133 153) 0 1.0000 1.0000 18 18 ( 2296 1hux_A) ( 2378 1i39_A) 0.2222 0.3077 3.9306 ( 0 3 6) 0 0.2972 0.3846 18 13 ( 2296 1hux_A) ( 2483 1ig8_A) 0.4444 0.7267 5.2847 ( 0 18 28) 0 0.4444 0.7267 18 11 ( 2296 1hux_A) ( 2484 1ig8_A) 0.3887 0.4662 8.6786 ( 0 14 21) 0 0.3888 0.4664 18 15 ( 2296 1hux_A) ( 2491 1ih7_A) 0.2778 0.1852 4.6664 ( 0 7 10) 0 0.4613 0.3526 18 27 ( 2296 1hux_A) ( 2619 1iv0_A) 0.3333 0.8568 3.7720 ( 0 8 15) 0 0.3333 0.8568 18 7 ( 2296 1hux_A) ( 2733 1j54_A) 0.3314 0.3803 9.5813 ( 3 12 21) 0 0.3314 0.4162 18 12 ( 2296 1hux_A) ( 2775 1j9a_A) 0.2771 0.3549 6.9452 ( 1 9 10) 0 0.3333 0.4285 18 14 ( 2296 1hux_A) ( 2821 1jce_A) 0.4439 0.6623 7.1478 ( 1 18 28) 0 0.4439 0.6623 18 12 ( 2296 1hux_A) ( 2822 1jce_A) 0.4901 0.5767 5.0038 ( 3 28 36) 0 0.4901 0.5767 18 15 ( 2296 1hux_A) ( 2910 1jj2_M) 0.3889 0.6361 5.1760 ( 0 14 21) 0 0.3889 0.6361 18 11 ( 2296 1hux_A) ( 2954 1jl1_A) 0.3881 0.6865 8.4634 ( 1 14 21) 0 0.3881 0.6865 18 10 ( 2296 1hux_A) ( 3210 1k8k_A) 0.4960 0.5553 9.3723 ( 2 25 36) 0 0.4960 0.5553 18 16 ( 2296 1hux_A) ( 3260 1kcf_A) 0.4344 0.6039 5.7481 ( 2 16 28) 0 0.4401 0.6368 18 12 ( 2296 1hux_A) ( 3286 1kfs_A) 0.2778 0.4167 4.2580 ( 0 6 10) 0 0.3758 0.5000 18 12 ( 2296 1hux_A) ( 3925 1mgt_A) 0.2222 0.6664 4.6766 ( 0 2 6) 0 0.2222 0.6664 18 6 ( 2296 1hux_A) ( 4043 1mus_A) 0.3332 0.2222 8.7869 ( 0 10 15) 0 0.4112 0.3163 18 27 ( 2296 1hux_A) ( 4057 1mwm_A) 0.4442 0.7243 5.7423 ( 1 22 28) 0 0.4442 0.7243 18 11 ( 2296 1hux_A) ( 4058 1mwm_A) 0.5539 0.8901 4.9256 ( 2 34 45) 0 0.5539 0.8901 18 11 ( 2296 1hux_A) ( 4191 1nbw_A) 0.2778 0.2778 3.7715 ( 0 6 10) 0 0.4443 0.4443 18 18 ( 2296 1hux_A) ( 4193 1nbw_A) 0.4902 0.5453 4.4811 ( 3 28 36) 0 0.4902 0.5453 18 16 ( 2296 1hux_A) ( 4281 1nk4_A) 0.3883 0.5788 5.1417 ( 1 14 21) 0 0.3883 0.5788 18 12 ( 2296 1hux_A) ( 4391 1nu0_A) 0.3889 0.8747 3.5679 ( 0 14 21) 0 0.3889 0.8747 18 8 ( 2296 1hux_A) ( 4469 1o13_A) 0.3889 0.8744 4.0974 ( 0 16 21) 0 0.3889 0.8746 18 8 ( 2296 1hux_A) ( 4935 1p90_A) 0.3889 0.6998 4.2352 ( 0 16 21) 0 0.3889 0.6998 18 10 ( 2296 1hux_A) ( 5120 1pv9_A) 0.4444 0.6660 6.0315 ( 0 20 28) 0 0.4444 0.6660 18 12 ( 2296 1hux_A) ( 5243 1q8i_A) 0.2778 0.1786 4.2929 ( 0 8 10) 0 0.4840 0.3196 18 28 ( 2296 1hux_A) ( 5447 1qtm_A) 0.3309 0.6039 5.3977 ( 1 8 15) 0 0.3309 0.6039 18 9 ( 2296 1hux_A) ( 5500 1qz5_A) 0.3889 0.6363 3.8198 ( 0 14 21) 0 0.3889 0.6363 18 11 ( 2296 1hux_A) ( 5501 1qz5_A) 0.4996 0.4996 6.6674 ( 1 27 36) 0 0.4996 0.4996 18 18 ( 2296 1hux_A) ( 5883 1t7p_A) 0.2781 0.2950 6.6970 ( 5 15 21) 0 0.3333 0.4998 18 12 ( 2296 1hux_A) ( 5906 1tgo_A) 0.4441 0.2962 6.0468 ( 1 20 28) 0 0.4442 0.3273 18 27 ( 2296 1hux_A) ( 6064 1uoc_A) 0.2778 0.2941 6.6579 ( 0 8 10) 0 0.4575 0.4755 18 17 ( 2296 1hux_A) ( 6249 1vhx_A) 0.4887 0.7562 4.9979 ( 3 27 36) 0 0.4887 0.7562 18 10 ( 2296 1hux_A) ( 6299 1vk0_A) 0.3333 0.4000 5.1135 ( 0 10 15) 0 0.3333 0.4000 18 15 ( 2296 1hux_A) ( 6323 1vrt_A) 0.3333 0.7493 5.2345 ( 0 8 15) 0 0.3333 0.7493 18 8 -------------------------------------------------------------------------------------------------------------------------