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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 2378 1i39_A) ( 247 1az9 ) 0.3846 0.3571 6.3095 ( 0 7 10) 0 0.4615 0.4455 13 14
( 2378 1i39_A) ( 345 1bco ) 0.3077 0.3636 7.5476 ( 0 2 6) 0 0.6899 0.8128 13 11
( 2378 1i39_A) ( 463 1bu6_O) 0.3077 0.2222 7.9087 ( 0 5 6) 0 0.3742 0.3315 13 18
( 2378 1i39_A) ( 464 1bu6_O) 0.3845 0.2941 7.5235 ( 0 6 10) 0 0.5098 0.4339 13 17
( 2378 1i39_A) ( 471 1bup_A) 0.5384 0.4375 4.5780 ( 0 15 21) 0 0.5384 0.4375 13 16
( 2378 1i39_A) ( 472 1bup_A) 0.2849 0.3014 16.6788 ( 1 4 6) 0 0.3077 0.3333 13 12
( 2378 1i39_A) ( 592 1chm_A) 0.3762 0.4044 7.1610 ( 1 7 10) 0 0.3762 0.4044 13 12
( 2378 1i39_A) ( 703 1cxq_A) 0.6153 0.7996 4.0957 ( 0 20 28) 0 0.6820 0.8641 13 10
( 2378 1i39_A) ( 713 1cza_N) 0.5384 0.6998 4.1861 ( 0 15 21) 0 0.5384 0.6998 13 10
( 2378 1i39_A) ( 714 1cza_N) 0.5788 0.5452 6.1312 ( 2 17 28) 0 0.5788 0.5452 13 14
( 2378 1i39_A) ( 934 1dt9_A) 0.3076 0.4441 8.6900 ( 0 4 6) 0 0.3846 0.5554 13 9
( 2378 1i39_A) ( 1021 1e3m_A) 0.3077 0.4444 4.6369 ( 0 0 6) 0 0.3133 0.4444 13 9
( 2378 1i39_A) ( 1033 1e4f_T) 0.5384 0.5000 4.3092 ( 0 15 21) 0 0.5384 0.5000 13 14
( 2378 1i39_A) ( 1034 1e4f_T) 0.5384 0.5384 3.6030 ( 0 15 21) 0 0.5384 0.5384 13 13
( 2378 1i39_A) ( 1191 1eke_A) 0.9973 0.9267 2.7728 ( 2 63 78) 0 0.9973 0.9267 13 14
( 2378 1i39_A) ( 1223 1eo1_A) 0.3568 0.4588 5.3175 ( 1 5 10) 0 0.3568 0.4998 13 8
( 2378 1i39_A) ( 1289 1ewq_A) 0.3846 0.4999 5.5479 ( 0 3 10) 0 0.3846 0.4999 13 10
( 2378 1i39_A) ( 1305 1exq_A) 0.5384 0.7773 4.6255 ( 0 16 21) 0 0.6145 0.8831 13 9
( 2378 1i39_A) ( 1522 1fjg_K) 0.5384 0.9986 4.3451 ( 0 10 21) 0 0.5384 0.9986 13 7
( 2378 1i39_A) ( 1656 1fxx_A) 0.4608 0.1935 9.8819 ( 0 10 15) 0 0.4608 0.2797 13 31
( 2378 1i39_A) ( 1778 1g99_A) 0.5384 0.6362 4.3076 ( 0 13 21) 0 0.5384 0.6363 13 11
( 2378 1i39_A) ( 1779 1g99_A) 0.3077 0.2500 5.0188 ( 0 4 6) 0 0.5963 0.5213 13 16
( 2378 1i39_A) ( 2218 1hjr_A) 0.3077 0.4000 4.3584 ( 0 2 6) 0 0.3762 0.4717 13 10
( 2378 1i39_A) ( 2296 1hux_A) 0.3845 0.2778 7.2607 ( 0 6 10) 0 0.3846 0.2972 13 18
( 2378 1i39_A) ( 2378 1i39_A) 1.0000 1.0000 0.0000 ( 0 64 78) 0 1.0000 1.0000 13 13
( 2378 1i39_A) ( 2483 1ig8_A) 0.6142 0.7246 3.4808 ( 1 21 28) 0 0.6142 0.7246 13 11
( 2378 1i39_A) ( 2484 1ig8_A) 0.3077 0.2666 7.7567 ( 0 5 6) 0 0.3077 0.2673 13 15
( 2378 1i39_A) ( 2491 1ih7_A) 0.3845 0.1852 8.3416 ( 0 3 10) 0 0.5692 0.3247 13 27
( 2378 1i39_A) ( 2619 1iv0_A) 0.5331 0.9057 3.9276 ( 1 12 21) 0 0.5331 0.9057 13 7
( 2378 1i39_A) ( 2733 1j54_A) 0.4495 0.4825 5.0142 ( 1 8 15) 0 0.4614 0.4997 13 12
( 2378 1i39_A) ( 2775 1j9a_A) 0.3113 0.3096 6.3851 ( 6 19 28) 0 0.3846 0.3571 13 14
( 2378 1i39_A) ( 2821 1jce_A) 0.6132 0.6634 4.0656 ( 1 18 28) 0 0.6132 0.6634 13 12
( 2378 1i39_A) ( 2822 1jce_A) 0.5384 0.4667 3.2404 ( 0 15 21) 0 0.5384 0.4667 13 15
( 2378 1i39_A) ( 2910 1jj2_M) 0.4615 0.5454 3.8069 ( 0 9 15) 0 0.4615 0.5454 13 11
( 2378 1i39_A) ( 2954 1jl1_A) 0.6138 0.7942 5.0442 ( 1 20 28) 0 0.6138 0.7942 13 10
( 2378 1i39_A) ( 3210 1k8k_A) 0.3076 0.2500 9.7709 ( 0 2 6) 0 0.3076 0.2500 13 16
( 2378 1i39_A) ( 3260 1kcf_A) 0.3846 0.4166 5.1677 ( 0 5 10) 0 0.3846 0.4166 13 12
( 2378 1i39_A) ( 3286 1kfs_A) 0.4615 0.4999 4.7663 ( 0 9 15) 0 0.4615 0.4999 13 12
( 2378 1i39_A) ( 3925 1mgt_A) 0.3076 0.6631 9.1902 ( 0 6 6) 0 0.3076 0.6631 13 6
( 2378 1i39_A) ( 4043 1mus_A) 0.3076 0.1481 8.5182 ( 0 3 6) 0 0.6188 0.3308 13 27
( 2378 1i39_A) ( 4057 1mwm_A) 0.5384 0.6363 3.6139 ( 0 15 21) 0 0.5384 0.6363 13 11
( 2378 1i39_A) ( 4058 1mwm_A) 0.3077 0.3636 6.8280 ( 0 3 6) 0 0.3077 0.3636 13 11
( 2378 1i39_A) ( 4191 1nbw_A) 0.5385 0.3889 2.6519 ( 0 13 21) 0 0.5385 0.3889 13 18
( 2378 1i39_A) ( 4193 1nbw_A) 0.6139 0.4995 4.3753 ( 1 20 28) 0 0.6150 0.4999 13 16
( 2378 1i39_A) ( 4281 1nk4_A) 0.4615 0.5000 4.4492 ( 0 9 15) 0 0.4615 0.5000 13 12
( 2378 1i39_A) ( 4391 1nu0_A) 0.3077 0.5000 3.9565 ( 0 3 6) 0 0.3077 0.5000 13 8
( 2378 1i39_A) ( 4469 1o13_A) 0.3077 0.4999 5.8130 ( 0 4 6) 0 0.3077 0.4999 13 8
( 2378 1i39_A) ( 4935 1p90_A) 0.3762 0.4715 8.0514 ( 1 7 10) 0 0.4319 0.4995 13 10
( 2378 1i39_A) ( 5120 1pv9_A) 0.5384 0.5833 4.0893 ( 0 11 21) 0 0.5384 0.5833 13 12
( 2378 1i39_A) ( 5243 1q8i_A) 0.3077 0.1429 6.1800 ( 0 5 6) 0 0.3846 0.2390 13 28
( 2378 1i39_A) ( 5447 1qtm_A) 0.3077 0.4443 6.2973 ( 0 4 6) 0 0.4537 0.6235 13 9
( 2378 1i39_A) ( 5500 1qz5_A) 0.5384 0.6363 3.2408 ( 0 12 21) 0 0.5854 0.6649 13 11
( 2378 1i39_A) ( 5501 1qz5_A) 0.3077 0.2222 6.6878 ( 0 5 6) 0 0.5384 0.3889 13 18
( 2378 1i39_A) ( 5883 1t7p_A) 0.5382 0.5830 6.0250 ( 0 15 21) 0 0.5382 0.5830 13 12
( 2378 1i39_A) ( 5906 1tgo_A) 0.3077 0.1481 6.3245 ( 0 3 6) 0 0.3077 0.2644 13 27
( 2378 1i39_A) ( 6064 1uoc_A) 0.3077 0.2353 7.6222 ( 0 5 6) 0 0.4565 0.4070 13 17
( 2378 1i39_A) ( 6249 1vhx_A) 0.6129 0.7910 6.9768 ( 1 19 28) 0 0.6129 0.7910 13 10
( 2378 1i39_A) ( 6299 1vk0_A) 0.3077 0.2667 6.8264 ( 0 4 6) 0 0.4607 0.3996 13 15
( 2378 1i39_A) ( 6323 1vrt_A) 0.5345 0.8346 4.2618 ( 1 13 21) 0 0.5345 0.8346 13 8
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